miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;AC138001.2/40361-40495 39947:Oryza sativa Japonica
Group
Length = 135
Score = 268 bits (135), Expect = 2e-71
Identities = 135/135 (100%)
Strand = Plus / Plus
Query: 6 ggtgtttggaatgcagtttgatccaagatctgcctatatatatggtgtgtatatcatatc 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtgtttggaatgcagtttgatccaagatctgcctatatatatggtgtgtatatcatatc 60
Query: 66 ttgtgatatgggggatatgcaacaggtgtgtgacaggggtaggtagatctcggatcaggc 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttgtgatatgggggatatgcaacaggtgtgtgacaggggtaggtagatctcggatcaggc 120
Query: 126 ttcattcctcacacc 140
|||||||||||||||
Sbjct: 121 ttcattcctcacacc 135
>RF00075;mir-166;AARH01005662.1/95261-95577 3694:Populus
trichocarpa
Length = 317
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 6 ggtgtttggaatgcagtttgatccaagatc 35
||||||||||||| ||||||||||||||||
Sbjct: 1 ggtgtttggaatgaagtttgatccaagatc 30
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 111 gatctcggatcaggcttcattcctcacacc 140
||||||||| |||||||||||||| |||||
Sbjct: 288 gatctcggaccaggcttcattccttacacc 317
>RF00075;mir-166;AARH01007982.1/90633-90310 3694:Populus
trichocarpa
Length = 324
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 6 ggtgtttggaatgcagtttgatccaagatc 35
||||||||||||| ||||||||||||||||
Sbjct: 1 ggtgtttggaatgaagtttgatccaagatc 30
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 111 gatctcggatcaggcttcattcctcacacc 140
||||||||| |||||||||||||| |||||
Sbjct: 295 gatctcggaccaggcttcattccttacacc 324
>RF00075;mir-166;AC148816.3/87512-87332 3880:Medicago truncatula
(barrel medic)
Length = 181
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 111 gatctcggatcaggcttcattcctcacacc 140
||||||||| ||||||||||||||||||||
Sbjct: 152 gatctcggaccaggcttcattcctcacacc 181
>RF00075;mir-166;AC235255.1/12904-12739 3847:Glycine max (soybean)
Length = 166
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 111 gatctcggatcaggcttcattcctcacacc 140
||||||||| ||||||||||||||||||||
Sbjct: 137 gatctcggaccaggcttcattcctcacacc 166
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 6 ggtgtttggaatgcagtttgatccaagatc 35
||||||||||||| |||||||||||||||
Sbjct: 1 ggtgtttggaatgaggtttgatccaagatc 30
>RF00075;mir-166;AP008218.1/18370254-18370388 39947:Oryza sativa
Japonica Group
Length = 135
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 111 gatctcggatcaggcttcattcctcacacc 140
||||||||| ||||||||||||||||||||
Sbjct: 106 gatctcggaccaggcttcattcctcacacc 135
>RF00075;mir-166;ABXC01005455.1/25016-25131 4558:Sorghum bicolor
(sorghum)
Length = 116
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 113 tctcggatcaggcttcattcctcacacc 140
||||||| ||||||||||||||||||||
Sbjct: 89 tctcggaccaggcttcattcctcacacc 116
>RF00075;mir-166;DQ908436.1/479-591 3635:Gossypium hirsutum (upland
cotton)
Length = 113
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 111 gatctcggatcaggcttcattcctcac 137
||||||||| |||||||||||||||||
Sbjct: 84 gatctcggaccaggcttcattcctcac 110
>RF00075;mir-166;CAAP02007291.1/14711-14590 29760:Vitis vinifera
Length = 122
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 6 ggtgtttggaatgcagtttgatccaagatc 35
||||||||||||| |||||||||||||||
Sbjct: 1 ggtgtttggaatgaggtttgatccaagatc 30
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 111 gatctcggatcaggcttcattcctcacacc 140
||||||||| |||||||||||||| |||||
Sbjct: 93 gatctcggaccaggcttcattcctgacacc 122
>RF00075;mir-166;AY501431.1/1-212 4577:Zea mays
Length = 212
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 108 gtagatctcggatcaggcttcattcc 133
|||||||||||| |||||||||||||
Sbjct: 182 gtagatctcggaccaggcttcattcc 207
>RF00075;mir-166;ABXC01006910.1/39676-39486 4558:Sorghum bicolor
(sorghum)
Length = 191
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 108 gtagatctcggatcaggcttcattcc 133
|||||||||||| |||||||||||||
Sbjct: 159 gtagatctcggaccaggcttcattcc 184
>RF00075;mir-166;AK251614.1/146-305 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 160
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 108 gtagatctcggatcaggcttcattcc 133
|||||||||||| |||||||||||||
Sbjct: 128 gtagatctcggaccaggcttcattcc 153
>RF00075;mir-166;AAAA02020902.1/104196-104017 39946:Oryza sativa
Indica Group
Length = 180
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 108 gtagatctcggatcaggcttcattcc 133
|||||||||||| |||||||||||||
Sbjct: 148 gtagatctcggaccaggcttcattcc 173
>RF00075;mir-166;AP003614.2/6887-6709 39947:Oryza sativa Japonica
Group
Length = 179
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 108 gtagatctcggatcaggcttcattcc 133
|||||||||||| |||||||||||||
Sbjct: 147 gtagatctcggaccaggcttcattcc 172
