miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;AACV01018689.1/7378-7519 39947:Oryza sativa
Japonica Group
Length = 142
Score = 228 bits (115), Expect = 2e-59
Identities = 133/142 (93%)
Strand = Plus / Plus
Query: 31 gttaaggggtttgttgtctggttcaaggcctcctgctgtcctacatcacannnnnnnnnc 90
|||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1 gttaaggggtttgttgtctggttcaaggcctcctgctgtcctacatcacatttttttttc 60
Query: 91 tttgttctgaatttctgatggatgtgtgtgtgcatgatgcatggctggtggtgacctcgg 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tttgttctgaatttctgatggatgtgtgtgtgcatgatgcatggctggtggtgacctcgg 120
Query: 151 accaggcttcattccctttaac 172
||||||||||||||||||||||
Sbjct: 121 accaggcttcattccctttaac 142
>RF00075;mir-166;AAAA02025700.1/14722-14582 39946:Oryza sativa
Indica Group
Length = 141
Score = 194 bits (98), Expect = 3e-49
Identities = 130/142 (91%), Gaps = 1/142 (0%)
Strand = Plus / Plus
Query: 31 gttaaggggtttgttgtctggttcaaggcctcctgctgtcctacatcacannnnnnnnnc 90
|||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct: 1 gttaaggggtttattgtctggttcaaggcctcctgctgtcctacatcacatttttttt-c 59
Query: 91 tttgttctgaatttctgatggatgtgtgtgtgcatgatgcatggctggtggtgacctcgg 150
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 tttgttctgaattattgatggatgtgtgtgtgcatgatgcatggctggtggtgacctcgg 119
Query: 151 accaggcttcattccctttaac 172
||||||||||||||||||||||
Sbjct: 120 accaggcttcattccctttaac 141
>RF00075;mir-166;AY551232.1/7-113 4530:Oryza sativa (rice)
Length = 107
Score = 52.0 bits (26), Expect = 3e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 139 tggtgacctcggaccaggcttcattccctttaac 172
|||||| |||||||||||||||| ||||||||||
Sbjct: 74 tggtgatctcggaccaggcttcaatccctttaac 107
Score = 50.1 bits (25), Expect = 1e-05
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 31 gttaaggggtttgttgtctggttcaaggcctcc 63
||||||||| |||||||||||||||||| ||||
Sbjct: 1 gttaaggggattgttgtctggttcaaggtctcc 33
>RF00075;mir-166;ABXC01000758.1/126828-126715 4558:Sorghum bicolor
(sorghum)
Length = 114
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 143 gacctcggaccaggcttcattccc 166
||||||||||||||||||||||||
Sbjct: 85 gacctcggaccaggcttcattccc 108
>RF00075;mir-166;AP004125.3/115130-115014 39947:Oryza sativa
Japonica Group
Length = 117
Score = 48.1 bits (24), Expect = 5e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 145 cctcggaccaggcttcattccctttaac 172
||||||||||||||||| ||||||||||
Sbjct: 90 cctcggaccaggcttcaatccctttaac 117
>RF00075;mir-166;AAAA02007467.1/8861-8977 39946:Oryza sativa Indica
Group
Length = 117
Score = 48.1 bits (24), Expect = 5e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 145 cctcggaccaggcttcattccctttaac 172
||||||||||||||||| ||||||||||
Sbjct: 90 cctcggaccaggcttcaatccctttaac 117
>RF00075;mir-166;AASG02003407.1/927-777 3988:Ricinus communis
(castor bean)
Length = 151
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 145 cctcggaccaggcttcattccctttaa 171
|||||||||||||||||||||| ||||
Sbjct: 124 cctcggaccaggcttcattccccttaa 150
Score = 44.1 bits (22), Expect = 7e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 32 ttaaggggtttgttgtctggttcaaggcct 61
|||||||| ||||||||||||||||||||
Sbjct: 2 ttaaggggaatgttgtctggttcaaggcct 31
>RF00075;mir-166;BABK01008352.1/1692-1590 34305:Lotus japonicus
Length = 103
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 146 ctcggaccaggcttcattccctt 168
|||||||||||||||||||||||
Sbjct: 77 ctcggaccaggcttcattccctt 99
>RF00075;mir-166;BT056134.1/436-541 4577:Zea mays
Length = 106
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 146 ctcggaccaggcttcattccctttaac 172
|||||||||||||||| ||||||||||
Sbjct: 80 ctcggaccaggcttcaatccctttaac 106
>RF00075;mir-166;ABXC01001421.1/165860-165981 4558:Sorghum bicolor
(sorghum)
Length = 122
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 146 ctcggaccaggcttcattccctttaac 172
|||||||||||||||| ||||||||||
Sbjct: 96 ctcggaccaggcttcaatccctttaac 122
>RF00075;mir-166;ABIM01012777.1/4514-4390 3649:Carica papaya
(papaya)
Length = 125
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 141 gtgacctcggaccaggcttcattccc 166
|||| |||||||||||||||||||||
Sbjct: 94 gtgatctcggaccaggcttcattccc 119
>RF00075;mir-166;AARH01006305.1/50528-50441 3694:Populus trichocarpa
Length = 88
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 145 cctcggaccaggcttcattccc 166
||||||||||||||||||||||
Sbjct: 61 cctcggaccaggcttcattccc 82
>RF00075;mir-166;AARH01003608.1/24010-23917 3694:Populus trichocarpa
Length = 94
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 141 gtgacctcggaccaggcttcattccc 166
|||| |||||||||||||||||||||
Sbjct: 63 gtgatctcggaccaggcttcattccc 88
>RF00075;mir-166;AC209184.1/141607-141700 3694:Populus trichocarpa
Length = 94
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 145 cctcggaccaggcttcattccc 166
||||||||||||||||||||||
Sbjct: 67 cctcggaccaggcttcattccc 88
>RF00075;mir-166;AASG02002547.1/1046-1166 3988:Ricinus communis
(castor bean)
Length = 121
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 141 gtgacctcggaccaggcttcattccc 166
||||| ||||||||||||||||||||
Sbjct: 90 gtgacgtcggaccaggcttcattccc 115
>RF00075;mir-166;BABK01014008.1/1327-1223 34305:Lotus japonicus
Length = 105
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 145 cctcggaccaggcttcattccc 166
||||||||||||||||||||||
Sbjct: 78 cctcggaccaggcttcattccc 99
>RF00075;mir-166;CAAP02000526.1/74430-74281 29760:Vitis vinifera
Length = 150
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 145 cctcggaccaggcttcattccc 166
||||||||||||||||||||||
Sbjct: 123 cctcggaccaggcttcattccc 144
>RF00075;mir-166;ABXC01002961.1/62223-62119 4558:Sorghum bicolor
(sorghum)
Length = 105
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 147 tcggaccaggcttcattccctttaac 172
||||||||||||||| ||||||||||
Sbjct: 80 tcggaccaggcttcaatccctttaac 105
>RF00075;mir-166;ABEU01001509.1/37358-37431 145481:Physcomitrella
patens subsp. patens
Length = 74
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 145 cctcggaccaggcttcattccc 166
||||||||||||||||||||||
Sbjct: 47 cctcggaccaggcttcattccc 68
