miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;AAAA02020690.1/41483-41278 39946:Oryza sativa
Indica Group
Length = 206
Score = 398 bits (201), Expect = e-110
Identities = 201/201 (100%)
Strand = Plus / Plus
Query: 1 tgtgagaggctgaagctgccagcatgatctggtccatgagttgcactgctgaatatattg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 tgtgagaggctgaagctgccagcatgatctggtccatgagttgcactgctgaatatattg 63
Query: 61 aattcagccaggagctgctactgcagttctgatctcgatctgcattcgttgttctgagct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 aattcagccaggagctgctactgcagttctgatctcgatctgcattcgttgttctgagct 123
Query: 121 atgtatggatttgatcggtttgaaggcatccatgtctttaatttcatcgatcagatcatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 atgtatggatttgatcggtttgaaggcatccatgtctttaatttcatcgatcagatcatg 183
Query: 181 ttgcagcttcactctctcact 201
|||||||||||||||||||||
Sbjct: 184 ttgcagcttcactctctcact 204
>RF00640;MIR167_1;AACV01003428.1/8526-8249 39947:Oryza sativa
Japonica Group
Length = 278
Score = 61.9 bits (31), Expect = 3e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 170 atcagatcatgttgcagcttcactctctcac 200
|||||||||||||||||||||||||||||||
Sbjct: 245 atcagatcatgttgcagcttcactctctcac 275
Score = 50.1 bits (25), Expect = 1e-05
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 1 tgtgagaggctgaagctgccagcatgatctggt 33
|||||||| |||||||||||||||||||||||
Sbjct: 4 tgtgagagaatgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;ABXC01006864.1/41201-41318 4558:Sorghum bicolor
(sorghum)
Length = 118
Score = 58.0 bits (29), Expect = 5e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 1 tgtgagaggctgaagctgccagcatgatctggt 33
||||||||| |||||||||||||||||||||||
Sbjct: 4 tgtgagaggttgaagctgccagcatgatctggt 36
Score = 54.0 bits (27), Expect = 8e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 172 cagatcatgttgcagcttcactctctc 198
|||||||||||||||||||||||||||
Sbjct: 87 cagatcatgttgcagcttcactctctc 113
>RF00640;MIR167_1;AARH01012195.1/26948-26514 3694:Populus
trichocarpa
Length = 435
Score = 54.0 bits (27), Expect = 8e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 3 tgagaggctgaagctgccagcatgatctggt 33
||||||| |||||||||||||||||||||||
Sbjct: 6 tgagaggttgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;AC212802.1/77650-78085 3694:Populus trichocarpa
Length = 436
Score = 54.0 bits (27), Expect = 8e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 3 tgagaggctgaagctgccagcatgatctggt 33
||||||| |||||||||||||||||||||||
Sbjct: 6 tgagaggttgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;BABK01002345.1/2496-2649 34305:Lotus japonicus
Length = 154
Score = 54.0 bits (27), Expect = 8e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 3 tgagaggctgaagctgccagcatgatctggt 33
||||||| |||||||||||||||||||||||
Sbjct: 6 tgagaggttgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;CAAP02000801.1/49293-49646 29760:Vitis vinifera
Length = 354
Score = 54.0 bits (27), Expect = 8e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 3 tgagaggctgaagctgccagcatgatctggt 33
||||||| |||||||||||||||||||||||
Sbjct: 6 tgagaggttgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;EU952646.1/178-293 4577:Zea mays
Length = 116
Score = 54.0 bits (27), Expect = 8e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 172 cagatcatgttgcagcttcactctctc 198
|||||||||||||||||||||||||||
Sbjct: 85 cagatcatgttgcagcttcactctctc 111
Score = 48.1 bits (24), Expect = 5e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 1 tgtgagaggctgaagctgccagcatgatctgg 32
|||||||| ||||||||||||||||||||||
Sbjct: 4 tgtgagagcttgaagctgccagcatgatctgg 35
>RF00640;MIR167_1;ABXC01002438.1/140052-139788 4558:Sorghum
bicolor (sorghum)
Length = 265
Score = 54.0 bits (27), Expect = 8e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 tgtgagaggctgaagctgccagcatgatctg 31
||||||||| |||||||||||||||||||||
Sbjct: 4 tgtgagaggttgaagctgccagcatgatctg 34
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 170 atcagatcatgttgcagcttcactctctcac 200
|||||||||||| ||| ||||||||||||||
Sbjct: 232 atcagatcatgtggcaccttcactctctcac 262
>RF00640;MIR167_1;EU549029.1/122-486 3702:Arabidopsis thaliana
(thale cress)
Length = 365
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 gctgaagctgccagcatgatctggt 33
|||||||||||||||||||||||||
Sbjct: 12 gctgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;EU549031.1/122-508 3702:Arabidopsis thaliana
(thale cress)
Length = 387
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 gctgaagctgccagcatgatctggt 33
|||||||||||||||||||||||||
Sbjct: 12 gctgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;EU549010.1/122-488 3702:Arabidopsis thaliana
(thale cress)
Length = 367
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 gctgaagctgccagcatgatctggt 33
|||||||||||||||||||||||||
Sbjct: 12 gctgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;AASG02013372.1/3243-2901 3988:Ricinus communis
(castor bean)
Length = 343
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgaagctgccagcatgatctggt 33
|||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;BT062276.1/99-327 4577:Zea mays
Length = 229
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgaagctgccagcatgatctggt 33
|||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;EU944277.1/110-337 4577:Zea mays
Length = 228
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgaagctgccagcatgatctggt 33
|||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;ABXC01002259.1/3174-3066 4558:Sorghum bicolor
(sorghum)
Length = 109
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 gctgaagctgccagcatgatctg 31
|||||||||||||||||||||||
Sbjct: 12 gctgaagctgccagcatgatctg 34
>RF00640;MIR167_1;ABXC01000844.1/72139-72006 4558:Sorghum bicolor
(sorghum)
Length = 134
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 gctgaagctgccagcatgatctg 31
|||||||||||||||||||||||
Sbjct: 12 gctgaagctgccagcatgatctg 34
>RF00640;MIR167_1;AP003800.3/19613-19499 39947:Oryza sativa
Japonica Group
Length = 115
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 gctgaagctgccagcatgatctg 31
|||||||||||||||||||||||
Sbjct: 12 gctgaagctgccagcatgatctg 34
>RF00640;MIR167_1;AAAA02003942.1/33918-33790 39946:Oryza sativa
Indica Group
Length = 129
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 gctgaagctgccagcatgatctg 31
|||||||||||||||||||||||
Sbjct: 12 gctgaagctgccagcatgatctg 34
>RF00640;MIR167_1;AASG02001065.1/6152-6064 3988:Ricinus communis
(castor bean)
Length = 89
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgaagctgccagcatgatctgg 32
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctgg 35
