miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00865;MIR169_5;AC123517.2/63512-63700 39947:Oryza sativa Japonica
Group
Length = 189
Score = 351 bits (177), Expect = 2e-96
Identities = 177/177 (100%)
Strand = Plus / Minus
Query: 1 ctccctttggtagccaagaatgacttgcctatgtgttttgccttgtgttggctcatccat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ctccctttggtagccaagaatgacttgcctatgtgttttgccttgtgttggctcatccat 122
Query: 61 ccatctatcagccgttgcagatttgcagtggcagattaaagggtttcagaaagaaattct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ccatctatcagccgttgcagatttgcagtggcagattaaagggtttcagaaagaaattct 62
Query: 121 tgtgatggatgtgcaatgtggctgcatgggccggtcttcttggctagccagagtggc 177
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgtgatggatgtgcaatgtggctgcatgggccggtcttcttggctagccagagtggc 5
>RF00865;MIR169_5;AAAA02031014.1/17953-17766 39946:Oryza sativa
Indica Group
Length = 188
Score = 165 bits (83), Expect = 3e-40
Identities = 156/178 (87%), Gaps = 13/178 (7%)
Strand = Plus / Minus
Query: 1 ctccctttggtagccaagaatgacttgcctatgtgttttgccttgtgttggctcatccat 60
||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||
Sbjct: 175 ctccctttggtagccaagaatgacttgcctatgc-ttttgccctctgttggctcatccat 117
Query: 61 ccatctatcagccgttgcagatttgcagtggcagattaaagggtttcagaaagaaattct 120
||||||||| || ||| ||||||||||| |||||| ||||||||||||
Sbjct: 116 ccatctatct----------atctgccatggcagattaa-gggtttttgaaagaaattct 68
Query: 121 tgtgat-ggatgtgcaatgtggctgcatgggccggtcttcttggctagccagagtggc 177
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 tgtgataggatgtgcaatgtggctgcatgggccggtcttcttggctagccagagtggc 10
>RF00865;MIR169_5;AC123517.2/59786-59972 39947:Oryza sativa Japonica
Group
Length = 187
Score = 157 bits (79), Expect = 6e-38
Identities = 159/182 (87%), Gaps = 14/182 (7%)
Strand = Plus / Minus
Query: 1 ctccctttggtagccaagaatgacttgcctatgtgttttgccttgtgttggctcatccat 60
||||||||||||||||||||||||||||||| | ||||||| | |||||||||||||||
Sbjct: 179 ctccctttggtagccaagaatgacttgcctacgc-ttttgccctctgttggctcatccat 121
Query: 61 cc----atctatcagccgttgcagatttgcagtggcagattaaagggtttcagaaagaaa 116
|| ||||||| ||| | |||||| |||||||||| ||||||| ||||||||
Sbjct: 120 ccgtctatctatctgccatggcagat-------ggcagattaa-gggtttctgaaagaaa 69
Query: 117 ttcttgtgat-ggatgtgcaatgtggctgcatgggccggtcttcttggctagccagagtg 175
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 68 ttcttgtgataggatgtgcaatgaggctgcatgggccggtcttcttggctagccagagtg 9
Query: 176 gc 177
||
Sbjct: 8 gc 7
>RF00865;MIR169_5;ABXC01003263.1/1171-1002 4558:Sorghum bicolor
(sorghum)
Length = 170
Score = 79.8 bits (40), Expect = 1e-14
Identities = 43/44 (97%)
Strand = Plus / Minus
Query: 132 tgcaatgtggctgcatgggccggtcttcttggctagccagagtg 175
|||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 54 tgcaatgtggctgcatgggcaggtcttcttggctagccagagtg 11
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 6 tttggtagccaagaatgacttgcctatg 33
|||| |||||||||||||||||||||||
Sbjct: 154 tttgctagccaagaatgacttgcctatg 127
>RF00865;MIR169_5;EU941000.1/258-87 4577:Zea mays
Length = 172
Score = 60.0 bits (30), Expect = 1e-08
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 132 tgcaatgtggctgcatgggccggtcttcttggctagccagag 173
||||||| |||||||| ||| |||||||||||||||||||||
Sbjct: 54 tgcaatgcggctgcatcggcaggtcttcttggctagccagag 13
Score = 56.0 bits (28), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 6 tttggtagccaagaatgacttgcctatg 33
||||||||||||||||||||||||||||
Sbjct: 157 tttggtagccaagaatgacttgcctatg 130
>RF00645;MIR169_2;EU941000.1/95-252 4577:Zea mays
Length = 158
Score = 60.0 bits (30), Expect = 1e-08
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 132 tgcaatgtggctgcatgggccggtcttcttggctagccagag 173
||||||| |||||||| ||| |||||||||||||||||||||
Sbjct: 111 tgcaatgcggctgcatcggcaggtcttcttggctagccagag 152
Score = 56.0 bits (28), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 6 tttggtagccaagaatgacttgcctatg 33
||||||||||||||||||||||||||||
Sbjct: 8 tttggtagccaagaatgacttgcctatg 35
>RF00865;MIR169_5;ABIM01014270.1/4571-4728 3649:Carica papaya
(papaya)
Length = 158
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 6 tttggtagccaagaatgacttgcct 30
|||||||||||||||||||||||||
Sbjct: 144 tttggtagccaagaatgacttgcct 120
>RF00645;MIR169_2;ABIM01014270.1/4721-4577 3649:Carica papaya
(papaya)
Length = 145
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 6 tttggtagccaagaatgacttgcct 30
|||||||||||||||||||||||||
Sbjct: 8 tttggtagccaagaatgacttgcct 32
>RF00865;MIR169_5;ABXC01004203.1/1754-1629 4558:Sorghum bicolor
(sorghum)
Length = 126
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 4 cctttggtagccaagaatgacttgccta 31
||||||||||||||| ||||||||||||
Sbjct: 113 cctttggtagccaaggatgacttgccta 86
>RF00865;MIR169_5;ABXC01004204.1/1140-1015 4558:Sorghum bicolor
(sorghum)
Length = 126
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 4 cctttggtagccaagaatgacttgccta 31
||||||||||||||| ||||||||||||
Sbjct: 113 cctttggtagccaaggatgacttgccta 86
>RF00645;MIR169_2;AASG02003632.1/1429-1542 3988:Ricinus communis
(castor bean)
Length = 114
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 6 tttggtagccaagaatgacttgcc 29
||||||||||||||||||||||||
Sbjct: 8 tttggtagccaagaatgacttgcc 31
>RF00645;MIR169_2;ABXC01004203.1/1636-1748 4558:Sorghum bicolor
(sorghum)
Length = 113
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 4 cctttggtagccaagaatgacttgccta 31
||||||||||||||| ||||||||||||
Sbjct: 7 cctttggtagccaaggatgacttgccta 34
>RF00645;MIR169_2;ABXC01004204.1/1022-1134 4558:Sorghum bicolor
(sorghum)
Length = 113
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 4 cctttggtagccaagaatgacttgccta 31
||||||||||||||| ||||||||||||
Sbjct: 7 cctttggtagccaaggatgacttgccta 34
>RF00865;MIR169_5;AARH01006471.1/67165-67023 3694:Populus
trichocarpa
Length = 143
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 6 tttggtagccaagaatgacttgcctat 32
||||||||||||| |||||||||||||
Sbjct: 126 tttggtagccaaggatgacttgcctat 100
>RF00645;MIR169_2;AARH01006471.1/67030-67159 3694:Populus
trichocarpa
Length = 130
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 6 tttggtagccaagaatgacttgcctat 32
||||||||||||| |||||||||||||
Sbjct: 11 tttggtagccaaggatgacttgcctat 37
>RF00865;MIR169_5;ABIM01001939.1/16104-16248 3649:Carica papaya
(papaya)
Length = 145
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 6 tttggtagccaagaatgacttgccta 31
||||||||||||| ||||||||||||
Sbjct: 129 tttggtagccaaggatgacttgccta 104
>RF00645;MIR169_2;ABIM01001939.1/16240-16110 3649:Carica papaya
(papaya)
Length = 131
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 6 tttggtagccaagaatgacttgccta 31
||||||||||||| ||||||||||||
Sbjct: 9 tttggtagccaaggatgacttgccta 34
