miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AACV01000479.1/66279-66476 39947:Oryza sativa
Japonica Group
Length = 198
Score = 389 bits (196), Expect = e-107
Identities = 196/196 (100%)
Strand = Plus / Plus
Query: 2 atggatggaagagagcgtccttcagtccactcatgggcggtgctagggtcgaattagctg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atggatggaagagagcgtccttcagtccactcatgggcggtgctagggtcgaattagctg 60
Query: 62 ccgactcattcacccacatgccaagcaagaaacgcttgagatagcgaagcttagcagatg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ccgactcattcacccacatgccaagcaagaaacgcttgagatagcgaagcttagcagatg 120
Query: 122 agtgaatgaagcgggaggtaacgttccgatctcgcgccgtctttgcttggactgaagggt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agtgaatgaagcgggaggtaacgttccgatctcgcgccgtctttgcttggactgaagggt 180
Query: 182 gctccctcctcctcga 197
||||||||||||||||
Sbjct: 181 gctccctcctcctcga 196
>RF00638;MIR159;EU946960.1/247-441 4577:Zea mays
Length = 195
Score = 202 bits (102), Expect = 1e-51
Identities = 169/188 (89%), Gaps = 5/188 (2%)
Strand = Plus / Plus
Query: 7 tggaagagagcgtccttcagtccactcatgggcggtgctagggtcgaattagctgccgac 66
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 6 tggaagagagcgtccttcagtccactcaggggcggtgctagggtcgaattagctgccgac 65
Query: 67 tcattcacccacatgccaagcaagaaacgcttgagatagcgaagcttagcagatgagtga 126
|||||||||||||||||||||| || || || | | ||||| ||||||||||||
Sbjct: 66 tcattcacccacatgccaagca--aacggccatggaaacc--agctttgcagatgagtga 121
Query: 127 atgaagcgggaggt-aacgttccgatctcgcgccgtctttgcttggactgaagggtgctc 185
|||||||||||||| || | | ||||||||| ||||||||||||||||||||||||||||
Sbjct: 122 atgaagcgggaggtaaaagcttcgatctcgcaccgtctttgcttggactgaagggtgctc 181
Query: 186 cctcctcc 193
||||||||
Sbjct: 182 cctcctcc 189
>RF00638;MIR159;ABXC01001681.1/23904-24102 4558:Sorghum bicolor
(sorghum)
Length = 199
Score = 198 bits (100), Expect = 2e-50
Identities = 172/192 (89%), Gaps = 3/192 (1%)
Strand = Plus / Plus
Query: 4 ggatggaagagagcgtccttcagtccactcatgggcggtgctagggtcgaattagctgcc 63
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 3 ggatggaagagagcgtccttcagtccactcaggggcggtgctagggtcgaattagctgcc 62
Query: 64 gactcattcacccacatgccaagcaagaaacgcttgaga-tagcgaagcttagcagatga 122
|||||||||||||||||||||||||| | | || | ||| ||||| ||||||||
Sbjct: 63 gactcattcacccacatgccaagcaaacggccatggaaacgagc-tagctttgcagatga 121
Query: 123 gtgaatgaagcgggaggt-aacgttccgatctcgcgccgtctttgcttggactgaagggt 181
|||||||||||||||||| || | | ||||||||| || |||||||||||||||||||||
Sbjct: 122 gtgaatgaagcgggaggtaaaagcttcgatctcgcaccatctttgcttggactgaagggt 181
Query: 182 gctccctcctcc 193
||||||||||||
Sbjct: 182 gctccctcctcc 193
>RF00638;MIR159;AY728409.1/1-184 3694:Populus trichocarpa
Length = 184
Score = 63.9 bits (32), Expect = 8e-10
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 10 aagagagcgtccttcagtccactcatgggcggtgctagggtcgaattagctgccgactca 69
|||||||| | |||||||||||||||||| ||| |||| | |||||||||||||||||
Sbjct: 8 aagagagctttcttcagtccactcatgggtggtagtaggatttaattagctgccgactca 67
Query: 70 ttca 73
||||
Sbjct: 68 ttca 71
>RF00638;MIR159;AASG02019405.1/2563-2341 3988:Ricinus communis
(castor bean)
Length = 223
Score = 63.9 bits (32), Expect = 8e-10
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 10 aagagagcgtccttcagtccactcatgggcggtgctagggtcgaattagctgccgactca 69
|||||||| | |||||||||||||||||| || | |||| | |||||||||||||||||
Sbjct: 9 aagagagctttcttcagtccactcatgggtggcggtaggatttaattagctgccgactca 68
Query: 70 ttca 73
||||
Sbjct: 69 ttca 72
>RF00638;MIR159;AM458581.1/27231-27413 29760:Vitis vinifera
Length = 183
Score = 56.0 bits (28), Expect = 2e-07
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 9 gaagagagcgtccttcagtccactcatgggcggtgctagggtcgaattagctgccgactc 68
||||||||| | |||||||||||||||||| || |||| | |||||||||||||||||
Sbjct: 8 gaagagagctttcttcagtccactcatgggtggcagtaggattgaattagctgccgactc 67
>RF00638;MIR159;CU459032.2/137942-137752 3880:Medicago truncatula
(barrel medic)
Length = 191
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 9 gaagagagcgtccttcagtccactcatgg 37
||||||||| |||||||||||||||||||
Sbjct: 8 gaagagagcttccttcagtccactcatgg 36
Score = 48.1 bits (24), Expect = 5e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 161 tctttgcttggactgaagggtgctccct 188
|||||||||||||||||||| |||||||
Sbjct: 153 tctttgcttggactgaagggagctccct 180
>RF00638;MIR159;CU570967.5/92301-92498 3880:Medicago truncatula
(barrel medic)
Length = 198
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 160 gtctttgcttggactgaagggtgctccct 188
||||||||||||||||||||| |||||||
Sbjct: 159 gtctttgcttggactgaagggagctccct 187
>RF00638;MIR159;AM471650.2/47253-47061 29760:Vitis vinifera
Length = 193
Score = 48.1 bits (24), Expect = 5e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 10 aagagagcgtccttcagtccactcatgg 37
|||||||| |||||||||||||||||||
Sbjct: 9 aagagagcttccttcagtccactcatgg 36
>RF00638;MIR159;AARH01005879.1/28103-28306 3694:Populus
trichocarpa
Length = 204
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 47 gggtcgaattagctgccgactcattca 73
|||| ||||||||||||||||||||||
Sbjct: 48 gggttgaattagctgccgactcattca 74
>RF00638;MIR159;BABK01011373.1/1521-1344 34305:Lotus japonicus
Length = 178
Score = 44.1 bits (22), Expect = 7e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 53 aattagctgccgactcattcacccacatgc 82
||||||||||||||||||||| ||| ||||
Sbjct: 52 aattagctgccgactcattcatccaaatgc 81
>RF00638;MIR159;AACV01002034.1/2269-2077 39947:Oryza sativa Japonica
Group
Length = 193
Score = 44.1 bits (22), Expect = 7e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 155 gcgccgtctttgcttggactgaagggtgctccct 188
||||||| | || |||||||||||||||||||||
Sbjct: 149 gcgccgtttgtggttggactgaagggtgctccct 182
