miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>42028_osa-MIR396c:mirbase
Length = 141
Score = 280 bits (141), Expect = 3e-76
Identities = 141/141 (100%)
Strand = Plus / Plus
Query: 1 tgccatgcctttccacagctttcttgaacttctcttgtgcctcactcactttcattactg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgccatgcctttccacagctttcttgaacttctcttgtgcctcactcactttcattactg 60
Query: 61 gagagatatgcatcatcagtggaagcttatagggagaggagtgcaagaagagggtcaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gagagatatgcatcatcagtggaagcttatagggagaggagtgcaagaagagggtcaaga 120
Query: 121 aagctgtgggaagaaatggca 141
|||||||||||||||||||||
Sbjct: 121 aagctgtgggaagaaatggca 141
>42584_sbi-MIR396c:mirbase
Length = 162
Score = 67.9 bits (34), Expect = 2e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 1 tgccatgcctttccacagctttcttgaacttctc 34
||||||||||||||||||||||||||||||||||
Sbjct: 11 tgccatgcctttccacagctttcttgaacttctc 44
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 108 aagagggtcaagaaagctgtgggaagaaatg 138
|||| ||||||||||||||||||||||||||
Sbjct: 120 aagaaggtcaagaaagctgtgggaagaaatg 150
>41795_bdi-MIR396e:mirbase
Length = 201
Score = 65.9 bits (33), Expect = 7e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 105 aagaagagggtcaagaaagctgtgggaagaaatggca 141
|||| ||||||||||||||||||||||||||||||||
Sbjct: 135 aagaggagggtcaagaaagctgtgggaagaaatggca 171
Score = 56.0 bits (28), Expect = 7e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 1 tgccatgcctttccacagctttcttgaacttc 32
|||||| |||||||||||||||||||||||||
Sbjct: 22 tgccattcctttccacagctttcttgaacttc 53
>41661_vvi-MIR396b:mirbase
Length = 108
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 1 tgccatgcctttccacagctttcttgaacttct 33
|||||||| ||||||||||||||||||||||||
Sbjct: 4 tgccatgcttttccacagctttcttgaacttct 36
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 13 ccacagctttcttgaacttc 32
||||||||||||||||||||
Sbjct: 95 ccacagctttcttgaacttc 76
>41439_ptc-MIR396e:mirbase
Length = 145
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 4 catgcctttccacagctttcttgaacttct 33
||||| ||||||||||||||||||||||||
Sbjct: 4 catgcttttccacagctttcttgaacttct 33
>41140_tcc-MIR396c:mirbase
Length = 152
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 2 gccatgcctttccacagctttcttgaactt 31
||||||| ||||||||||||||||||||||
Sbjct: 12 gccatgcttttccacagctttcttgaactt 41
>40476_gma-MIR396d:mirbase
Length = 108
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 4 catgcctttccacagctttcttgaacttct 33
||||| ||||||||||||||||||||||||
Sbjct: 4 catgcttttccacagctttcttgaacttct 33
>40474_gma-MIR396b:mirbase
Length = 126
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 4 catgcctttccacagctttcttgaacttct 33
||||| ||||||||||||||||||||||||
Sbjct: 14 catgcttttccacagctttcttgaacttct 43
>41438_ptc-MIR396d:mirbase
Length = 154
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 4 catgcctttccacagctttcttgaacttc 32
||||| |||||||||||||||||||||||
Sbjct: 4 catgcttttccacagctttcttgaacttc 32
>41212_ccl-MIR396:mirbase
Length = 277
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 4 catgcctttccacagctttcttgaacttc 32
||||| |||||||||||||||||||||||
Sbjct: 136 catgcttttccacagctttcttgaacttc 164
>41142_tcc-MIR396e:mirbase
Length = 146
Score = 50.1 bits (25), Expect = 4e-07
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 4 catgcctttccacagctttcttgaacttctctt 36
||||| ||||||| |||||||||||||||||||
Sbjct: 131 catgcttttccacggctttcttgaacttctctt 99
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaacttct 33
|||||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaacttct 43
>40475_gma-MIR396c:mirbase
Length = 117
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 5 atgcctttccacagctttcttgaacttct 33
|||| ||||||||||||||||||||||||
Sbjct: 15 atgcttttccacagctttcttgaacttct 43
>42812_zma-MIR396f:mirbase
Length = 117
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 tttccacagctttcttgaacttct 33
||||||||||||||||||||||||
Sbjct: 1 tttccacagctttcttgaacttct 24
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 113 ggtcaagaaagctgtgggaaga 134
||||||||||||||||||||||
Sbjct: 96 ggtcaagaaagctgtgggaaga 117
>42811_zma-MIR396e:mirbase
Length = 166
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 tttccacagctttcttgaacttct 33
||||||||||||||||||||||||
Sbjct: 1 tttccacagctttcttgaacttct 24
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 107 gaagagggtcaagaaagctgtgggaaga 134
||||| |||||||||||| |||||||||
Sbjct: 139 gaagaaggtcaagaaagccgtgggaaga 166
>41437_ptc-MIR396c:mirbase
Length = 102
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 1 tgccatgcctttccacagctttcttgaacttc 32
||||||| |||||||||||||||||||||||
Sbjct: 1 tgccatgtttttccacagctttcttgaacttc 32
>41243_csi-MIR396c:mirbase
Length = 178
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 tttccacagctttcttgaacttct 33
||||||||||||||||||||||||
Sbjct: 12 tttccacagctttcttgaacttct 35
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 115 tcaagaaagctgtgggaagaaatggca 141
|||||||| ||||||||||||||||||
Sbjct: 150 tcaagaaatctgtgggaagaaatggca 176
>40726_mtr-MIR396a:mirbase
Length = 93
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 tttccacagctttcttgaacttct 33
||||||||||||||||||||||||
Sbjct: 5 tttccacagctttcttgaacttct 28
>40379_rco-MIR396:mirbase
Length = 124
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 tttccacagctttcttgaacttct 33
||||||||||||||||||||||||
Sbjct: 5 tttccacagctttcttgaacttct 28
>41660_vvi-MIR396a:mirbase
Length = 116
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 4 catgcctttccacagctttcttgaact 30
||||| |||||||||||||||||||||
Sbjct: 7 catgcttttccacagctttcttgaact 33
>40086_ath-MIR396b:mirbase
Length = 135
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 tttccacagctttcttgaactt 31
||||||||||||||||||||||
Sbjct: 10 tttccacagctttcttgaactt 31
>39878_aly-MIR396b:mirbase
Length = 188
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 tttccacagctttcttgaactt 31
||||||||||||||||||||||
Sbjct: 31 tttccacagctttcttgaactt 52
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 105 aagaagagggtcaagaaagctgtgggaa 132
||||||| | ||||||||||||||||||
Sbjct: 127 aagaagaagctcaagaaagctgtgggaa 154
>39426_pta-MIR396:mirbase
Length = 119
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 tttccacagctttcttgaactt 31
||||||||||||||||||||||
Sbjct: 16 tttccacagctttcttgaactt 37
>41242_csi-MIR396b:mirbase
Length = 134
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 10 tttccacagctttcttgaact 30
|||||||||||||||||||||
Sbjct: 19 tttccacagctttcttgaact 39
>41189_aqc-MIR396b:mirbase
Length = 89
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaactt 31
|||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactt 21
>41138_tcc-MIR396a:mirbase
Length = 146
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 10 tttccacagctttcttgaact 30
|||||||||||||||||||||
Sbjct: 20 tttccacagctttcttgaact 40
>40296_bna-MIR396a:mirbase
Length = 117
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaactt 31
|||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactt 21
>39379_pab-MIR396a:mirbase
Length = 100
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 2 gccatgcctttccacagctttcttgaact 30
||||||| ||||||||||||||||||||
Sbjct: 7 gccatgctcttccacagctttcttgaact 35
>42814_zma-MIR396h:mirbase
Length = 124
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 98 ttccacagctttcttgaact 79
>42813_zma-MIR396g:mirbase
Length = 114
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 111 ttccacagctttcttgaact 92
>42808_zma-MIR396b:mirbase
Length = 136
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>42807_zma-MIR396a:mirbase
Length = 137
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>42583_sbi-MIR396b:mirbase
Length = 128
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>42582_sbi-MIR396a:mirbase
Length = 125
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>42472_ssp-MIR396:mirbase
Length = 95
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>42461_sof-MIR396:mirbase
Length = 134
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>42027_osa-MIR396b:mirbase
Length = 116
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>42026_osa-MIR396a:mirbase
Length = 154
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>41794_bdi-MIR396d:mirbase
Length = 152
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 33 ttccacagctttcttgaact 52
>41793_bdi-MIR396c:mirbase
Length = 153
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 33 ttccacagctttcttgaact 52
>41663_vvi-MIR396d:mirbase
Length = 120
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>41662_vvi-MIR396c:mirbase
Length = 108
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>41441_ptc-MIR396g:mirbase
Length = 168
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 4 catgcctttccacagctttcttgaactt 31
||||| ||||||| ||||||||||||||
Sbjct: 4 catgcttttccacggctttcttgaactt 31
>41436_ptc-MIR396b:mirbase
Length = 132
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>41435_ptc-MIR396a:mirbase
Length = 123
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>41241_csi-MIR396a:mirbase
Length = 153
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>41188_aqc-MIR396a:mirbase
Length = 122
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>41141_tcc-MIR396d:mirbase
Length = 182
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 4 catgcctttccacagctttcttgaactt 31
||||| ||||||| ||||||||||||||
Sbjct: 14 catgcttttccacggctttcttgaactt 41
>41139_tcc-MIR396b:mirbase
Length = 151
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>41058_ghr-MIR396b:mirbase
Length = 135
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>41057_ghr-MIR396a:mirbase
Length = 136
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>40727_mtr-MIR396b:mirbase
Length = 95
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 6 ttccacagctttcttgaact 25
>40646_lja-MIR396:mirbase
Length = 108
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 16 ttccacagctttcttgaact 35
>40477_gma-MIR396e:mirbase
Length = 114
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 7 ttccacagctttcttgaact 26
>40473_gma-MIR396a:mirbase
Length = 140
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>40085_ath-MIR396a:mirbase
Length = 151
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>39877_aly-MIR396a:mirbase
Length = 172
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 24 ttccacagctttcttgaact 43
>39741_smo-MIR396:mirbase
Length = 168
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 13 ccacagctttcttgaacttc 32
||||||||||||||||||||
Sbjct: 153 ccacagctttcttgaacttc 134
