miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01925;MIR1428;AP004317.1/76457-76580 39947:Oryza sativa Japonica
Group
Length = 124
Score = 135 bits (68), Expect = 1e-31
Identities = 98/108 (90%)
Strand = Plus / Plus
Query: 1 cgctttgcgaattcacaggccctatcttgtggtatgaactgagtacgcgatgatttatgg 60
|||||||||||||||| || | ||||||||||||||||||||||||| |||||||||||
Sbjct: 9 cgctttgcgaattcacgggtcttatcttgtggtatgaactgagtacgtaatgatttatgg 68
Query: 61 cgcatattgggggcttaccaaaagataatgctgtgaatttgcaaagcg 108
||||||||||||||||||| |||||||||| |||||| ||||||||
Sbjct: 69 tgcatattgggggcttaccataagataatgccatgaattcgcaaagcg 116
>RF01925;MIR1428;AP003208.3/119377-119500 39947:Oryza sativa
Japonica Group
Length = 124
Score = 131 bits (66), Expect = 2e-30
Identities = 93/102 (91%)
Strand = Plus / Plus
Query: 4 tttgcgaattcacaggccctatcttgtggtatgaactgagtacgcgatgatttatggcgc 63
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 12 tttgcaaattcgcaggccctatcttgtggtatgaactgagtacgcgatgatttatcctgc 71
Query: 64 atattgggggcttaccaaaagataatgctgtgaatttgcaaa 105
|||||||||||||||| ||||||| || |||||||||||||
Sbjct: 72 gtattgggggcttaccataagataaagccgtgaatttgcaaa 113
>RF01925;MIR1428;AP008215.1/17601136-17601259 39947:Oryza sativa
Japonica Group
Length = 124
Score = 119 bits (60), Expect = 8e-27
Identities = 87/96 (90%)
Strand = Plus / Plus
Query: 7 gcgaattcacaggccctatcttgtggtatgaactgagtacgcgatgatttatggcgcata 66
||||||||||||| | |||||||||||||||||| |||||| |||||||||||| | ||
Sbjct: 15 gcgaattcacaggacatatcttgtggtatgaactaagtacgtgatgatttatggtgtgta 74
Query: 67 ttgggggcttaccaaaagataatgctgtgaatttgc 102
|||||||||||||| ||||||| |||||||||||||
Sbjct: 75 ttgggggcttaccataagataaggctgtgaatttgc 110
>RF01925;MIR1428;CT829550.1/403-526 39946:Oryza sativa Indica Group
Length = 124
Score = 119 bits (60), Expect = 8e-27
Identities = 96/108 (88%)
Strand = Plus / Plus
Query: 1 cgctttgcgaattcacaggccctatcttgtggtatgaactgagtacgcgatgatttatgg 60
||||| |||||||| || ||||||||||||||||||||||||| || |||| ||||||||
Sbjct: 9 cgcttggcgaattcgcatgccctatcttgtggtatgaactgagcacacgataatttatgg 68
Query: 61 cgcatattgggggcttaccaaaagataatgctgtgaatttgcaaagcg 108
|| |||||||||||||| | |||||||||| |||||||||| |||||
Sbjct: 69 tgcgtattgggggcttacaataagataatgccgtgaatttgctaagcg 116
>RF01925;MIR1428;AP008209.1/20914589-20914712 39947:Oryza sativa
Japonica Group
Length = 124
Score = 117 bits (59), Expect = 3e-26
Identities = 95/107 (88%)
Strand = Plus / Plus
Query: 1 cgctttgcgaattcacaggccctatcttgtggtatgaactgagtacgcgatgatttatgg 60
||||||||||||| ||| ||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 9 cgctttgcgaatttacatgccttatcttgtggtatgaactgagtacgcgataatttatgg 68
Query: 61 cgcatattgggggcttaccaaaagataatgctgtgaatttgcaaagc 107
| |||||||||||||||| ||||||||| || |||| |||||||
Sbjct: 69 tgtgtattgggggcttaccataagataatgtcgtaaattcgcaaagc 115
>RF01925;MIR1428;AK102950.1/85-208 39947:Oryza sativa Japonica Group
Length = 124
Score = 113 bits (57), Expect = 5e-25
Identities = 90/101 (89%)
Strand = Plus / Plus
Query: 1 cgctttgcgaattcacaggccctatcttgtggtatgaactgagtacgcgatgatttatgg 60
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 9 cgcttggcgaattcacaggccctatcttgtggtatgaactgggtacgcgatgatttgcac 68
Query: 61 cgcatattgggggcttaccaaaagataatgctgtgaatttg 101
|| |||||||||||||||| |||||||||| ||||||||
Sbjct: 69 tgcgtattgggggcttaccataagataatgccatgaatttg 109
>RF01925;MIR1428;AP008211.1/18802928-18802805 39947:Oryza sativa
Japonica Group
Length = 124
Score = 89.7 bits (45), Expect = 7e-18
Identities = 85/97 (87%), Gaps = 1/97 (1%)
Strand = Plus / Plus
Query: 12 ttcacaggccctatcttgtggtatgaactgagtacgcgatgatttatggcgcatattggg 71
||||||||||||| ||| |||||||||||||||||||||||||| |||| || |||| |
Sbjct: 21 ttcacaggcccta-cttctggtatgaactgagtacgcgatgattcatggtgcgtattaga 79
Query: 72 ggcttaccaaaagataatgctgtgaatttgcaaagcg 108
||||||||| ||||||||| ||||||| || |||||
Sbjct: 80 ggcttaccataagataatgtcgtgaattcgccaagcg 116
>RF01925;MIR1428;AAAA02009114.1/9641-9518 39946:Oryza sativa Indica
Group
Length = 124
Score = 79.8 bits (40), Expect = 7e-15
Identities = 88/104 (84%)
Strand = Plus / Plus
Query: 3 ctttgcgaattcacaggccctatcttgtggtatgaactgagtacgcgatgatttatggcg 62
|||||| |||| ||||| ||||||||||||||||| |||||||||||||||| | |
Sbjct: 11 ctttgcaaatttgcaggctctatcttgtggtatgaaatgagtacgcgatgattccttttg 70
Query: 63 catattgggggcttaccaaaagataatgctgtgaatttgcaaag 106
| ||||||||||| |||| ||||||| || | ||||||||||||
Sbjct: 71 cgtattgggggctgaccataagataaagccgcgaatttgcaaag 114
>RF01925;MIR1428;AP005676.3/52831-52709 39947:Oryza sativa
Japonica Group
Length = 123
Score = 71.9 bits (36), Expect = 2e-12
Identities = 64/72 (88%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 9 gaattcacaggccctatcttgtggtatgaactgagtacgcgatgatttatggcgcatatt 68
|||||||||||| ||||||||||||||||||||||||| || ||| |||||| | ||||
Sbjct: 17 gaattcacaggctctatcttgtggtatgaactgagtacacggtga-ttatggtgagtatt 75
Query: 69 gggggcttacca 80
|||| |||||||
Sbjct: 76 ggggtcttacca 87
