miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF02000;MIR1846;AACV01005065.1/8234-8319 39947:Oryza sativa
Japonica Group
Length = 86
Score = 107 bits (54), Expect = 2e-23
Identities = 75/82 (91%)
Strand = Plus / Plus
Query: 3 atgagccgtcggatctcctagtaaggaggccggggccgtcagatccggtgaccccggtct 62
|||||||| ||||||||| ||| ||||||||||||||| | |||||||||||||||||||
Sbjct: 1 atgagccgccggatctcccagtgaggaggccggggccgccggatccggtgaccccggtct 60
Query: 63 cctcaccggcggatccggcgcc 84
|||| |||| ||||||||||||
Sbjct: 61 cctcgccggtggatccggcgcc 82
>RF02000;MIR1846;AC087412.14/69387-69471 39947:Oryza sativa
Japonica Group
Length = 85
Score = 99.6 bits (50), Expect = 6e-21
Identities = 68/74 (91%)
Strand = Plus / Plus
Query: 6 agccgtcggatctcctagtaaggaggccggggccgtcagatccggtgaccccggtctcct 65
||||| ||||||||||||| ||||||||||| ||| | ||||||||||||||||||||||
Sbjct: 4 agccgccggatctcctagtgaggaggccgggaccgccggatccggtgaccccggtctcct 63
Query: 66 caccggcggatccg 79
| ||||||||||||
Sbjct: 64 cgccggcggatccg 77
>RF02000;MIR1846;AACV01002897.1/82779-82864 39947:Oryza sativa
Japonica Group
Length = 86
Score = 81.8 bits (41), Expect = 1e-15
Identities = 65/73 (89%)
Strand = Plus / Plus
Query: 12 cggatctcctagtaaggaggccggggccgtcagatccggtgaccccggtctcctcaccgg 71
||||||||| ||| || ||||| |||||| ||||||||||||||||||||||||| ||||
Sbjct: 10 cggatctcccagtgagtaggcccgggccgccagatccggtgaccccggtctcctcgccgg 69
Query: 72 cggatccggcgcc 84
| ||||||||||
Sbjct: 70 tgtatccggcgcc 82
>RF02000;MIR1846;AK101387.1/107-181 39947:Oryza sativa Japonica
Group
Length = 75
Score = 60.0 bits (30), Expect = 5e-09
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 26 aggaggccggggccgtcagatccggtgaccccggtctcctcaccggcgga 75
||||||||||| ||||| |||||||||||||||| |||||| |||||||
Sbjct: 19 aggaggccgggaccgtcggatccggtgaccccggcctcctcgtcggcgga 68
>RF02000;MIR1846;AACV01002364.1/1355-1286 39947:Oryza sativa
Japonica Group
Length = 70
Score = 54.0 bits (27), Expect = 3e-07
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 26 aggaggccggggccgtcagatccggtgaccccggtctcctcaccggcggatccgg 80
||||||||||| | ||| ||||||||||| |||| |||||| ||||| |||||||
Sbjct: 16 aggaggccgggactgtcggatccggtgactccggcctcctcgccggcagatccgg 70
>RF02000;MIR1846;AAAA02031642.1/3210-3295 39946:Oryza sativa
Indica Group
Length = 86
Score = 52.0 bits (26), Expect = 1e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 25 aaggaggccggggccgtcagatccggtgaccccggtctcctc 66
||||||||| ||||| |||||||||||||||||| ||||||
Sbjct: 23 aaggaggcccgggccaccagatccggtgaccccggcctcctc 64
>RF02000;MIR1846;AP005393.3/71056-70970 39947:Oryza sativa
Japonica Group
Length = 87
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 26 aggaggccggggccgtcagatccggtgaccccgg 59
||||||||||| ||||| ||||||||||||||||
Sbjct: 24 aggaggccgggaccgtcggatccggtgaccccgg 57
>RF02000;MIR1846;AAAA02031067.1/51056-50970 39946:Oryza sativa
Indica Group
Length = 87
Score = 50.1 bits (25), Expect = 5e-06
Identities = 61/73 (83%)
Strand = Plus / Plus
Query: 12 cggatctcctagtaaggaggccggggccgtcagatccggtgaccccggtctcctcaccgg 71
||||||||| | | ||||||| |||||| | |||||| ||||||| ||||||| ||||
Sbjct: 10 cggatctcccaatgaggaggctggggccaccggatccgatgaccccattctcctcgccgg 69
Query: 72 cggatccggcgcc 84
||||||| |||||
Sbjct: 70 cggatccagcgcc 82
>RF02000;MIR1846;AP003234.3/152723-152636 39947:Oryza sativa
Japonica Group
Length = 88
Score = 48.1 bits (24), Expect = 2e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 27 ggaggccggggccgtcagatccggtgaccccggtctcctc 66
||||||||||| || ||||||||||| |||||| ||||||
Sbjct: 26 ggaggccggggtcgccagatccggtgtccccggcctcctc 65
>RF02000;MIR1846;AP008209.1/2437922-2438008 39947:Oryza sativa
Japonica Group
Length = 87
Score = 46.1 bits (23), Expect = 7e-05
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 14 gatctcctagtaaggaggccggggccgtcagatccggtgaccccggtctcctcaccggcg 73
||||||| ||| ||||| | |||||| | |||||||||| ||| |||||| ||||||
Sbjct: 12 gatctcccagtgaggagactagggccgccggatccggtgatcccattctccttgccggcg 71
Query: 74 gatccggcgcc 84
|||||||||||
Sbjct: 72 gatccggcgcc 82
