miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AP004026.3/36995-37112 39947:Oryza sativa Japonica
Group
Length = 118
Score = 63.9 bits (32), Expect = 6e-10
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 9 tcctctgtttcatattataagattttctagcattatccac 48
||||| |||||||||||||||| |||||||||||||||||
Sbjct: 110 tcctccgtttcatattataagactttctagcattatccac 71
Score = 54.0 bits (27), Expect = 6e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 10 cctctgtttcatattataagattttctagcattatccac 48
|||| |||||||||||||||| ||| |||||||||||||
Sbjct: 10 cctccgtttcatattataagactttatagcattatccac 48
>RF00906;MIR1122;AL844497.4/117501-117363 4530:Oryza sativa (rice)
Length = 139
Score = 63.9 bits (32), Expect = 6e-10
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 9 tcctctgtttcatattataagattttctagcattatccac 48
|||||||||||||||||||||| ||||||||||| |||||
Sbjct: 131 tcctctgtttcatattataagactttctagcattgtccac 92
Score = 48.1 bits (24), Expect = 4e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 9 tcctctgtttcatattataagattttctagcattatccac 48
||||| ||||| |||||||||| |||||||||||| ||||
Sbjct: 9 tcctccgtttcttattataagactttctagcattacccac 48
>RF00906;MIR1122;AP005603.3/127883-127741 39947:Oryza sativa
Japonica Group
Length = 143
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 118 tagaaagtcttataacctgaaacggagggag 148
|||||||||||||||||||||||||||||||
Sbjct: 37 tagaaagtcttataacctgaaacggagggag 7
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 118 tagaaagtcttataacctgaaacggagg 145
|||||||||||||| |||||||||||||
Sbjct: 107 tagaaagtcttatagcctgaaacggagg 134
>RF00906;MIR1122;AACV01016547.1/15069-15198 39947:Oryza sativa
Japonica Group
Length = 130
Score = 58.0 bits (29), Expect = 4e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 10 cctctgtttcatattataagattttctagcatt 42
|||| ||||||||||||||||||||||||||||
Sbjct: 10 cctccgtttcatattataagattttctagcatt 42
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 9 tcctctgtttcatattataagattttctagcatt 42
||||| |||||||||||||||| |||||||||||
Sbjct: 122 tcctccgtttcatattataagactttctagcatt 89
>RF00906;MIR1122;AP008214.1/27990633-27990493 39947:Oryza sativa
Japonica Group
Length = 141
Score = 56.0 bits (28), Expect = 1e-07
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 9 tcctctgtttcatattataagattttctagcattatccac 48
||||| |||||||||||||||| ||||||||||| |||||
Sbjct: 133 tcctccgtttcatattataagactttctagcattgtccac 94
Score = 54.0 bits (27), Expect = 6e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 10 cctctgtttcatattataagattttctagcattatccac 48
|||| |||||||||||||||| ||||||||||| |||||
Sbjct: 10 cctccgtttcatattataagactttctagcattgtccac 48
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 118 tagaaagtcttataacctgaaacggagggag 148
||||||||||||||| ||||||||||||||
Sbjct: 37 tagaaagtcttataatatgaaacggagggag 7
>RF00906;MIR1122;AACV01013308.1/27395-27278 39947:Oryza sativa
Japonica Group
Length = 118
Score = 54.0 bits (27), Expect = 6e-07
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 114 atgttagaaagtcttataacctgaaacggagggag 148
||||||||||||||||||| ||||||||||||||
Sbjct: 41 atgttagaaagtcttataatatgaaacggagggag 7
Score = 54.0 bits (27), Expect = 6e-07
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 9 tcctctgtttcatattataagattttctagcatta 43
||||| |||||||||||||||| ||||||||||||
Sbjct: 110 tcctccgtttcatattataagactttctagcatta 76
>RF00906;MIR1122;AAAA02033121.1/1765-1675 39946:Oryza sativa Indica
Group
Length = 91
Score = 54.0 bits (27), Expect = 6e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 118 tagaaagtcttataacctgaaacggagggag 148
||||||||||||||||||||||| |||||||
Sbjct: 37 tagaaagtcttataacctgaaacagagggag 7
Score = 54.0 bits (27), Expect = 6e-07
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 9 tcctctgtttcatattataagattttctagcattatccacgtt 51
||||| |||||||||||||||| ||||||||||| |||||||
Sbjct: 83 tcctccgtttcatattataagactttctagcattgcccacgtt 41
>RF00906;MIR1122;CR855160.1/66114-66007 4530:Oryza sativa (rice)
Length = 108
Score = 54.0 bits (27), Expect = 6e-07
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 9 tcctctgtttcatattataagattttctagcattatccacgtt 51
||||| |||||||||||||||| ||||||||||| |||||||
Sbjct: 100 tcctccgtttcatattataagactttctagcattgcccacgtt 58
Score = 50.1 bits (25), Expect = 9e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 10 cctctgtttcatattataagattttctagcatt 42
|||| |||||||||||||||| |||||||||||
Sbjct: 10 cctccgtttcatattataagactttctagcatt 42
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 118 tagaaagtcttataacctgaaacggagggag 148
||||||||||||||| ||||||||||||||
Sbjct: 37 tagaaagtcttataatatgaaacggagggag 7
>RF00906;MIR1122;AACV01003992.1/29908-29746 39947:Oryza sativa
Japonica Group
Length = 163
Score = 54.0 bits (27), Expect = 6e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 10 cctctgtttcatattataagattttctagcattatccac 48
|||| |||||||||||||||| |||||||||||| ||||
Sbjct: 10 cctccgtttcatattataagactttctagcattacccac 48
Score = 54.0 bits (27), Expect = 6e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 118 tagaaagtcttataacctgaaacggagggag 148
||||||||||||||| |||||||||||||||
Sbjct: 127 tagaaagtcttataatctgaaacggagggag 157
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 118 tagaaagtcttataacctgaaacggagggag 148
||||||||||||||| ||||||||||||||
Sbjct: 37 tagaaagtcttataatatgaaacggagggag 7
>RF00906;MIR1122;AAAA02023450.1/14767-14902 39946:Oryza sativa
Indica Group
Length = 136
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 9 tcctctgtttcatattataagattttctagcatt 42
||||| |||||||||||||||| |||||||||||
Sbjct: 128 tcctcagtttcatattataagactttctagcatt 95
Score = 50.1 bits (25), Expect = 9e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 10 cctctgtttcatattataagattttctagcatt 42
|||| |||||||||||||||| |||||||||||
Sbjct: 10 cctccgtttcatattataagactttctagcatt 42
Score = 48.1 bits (24), Expect = 4e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 118 tagaaagtcttataacctgaaacggagggagcagta 153
||||||||||||||| |||||||||||||| ||||
Sbjct: 37 tagaaagtcttataatatgaaacggagggagtagta 2
>RF00906;MIR1122;AP004764.2/29265-29128 39947:Oryza sativa
Japonica Group
Length = 138
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 9 tcctctgtttcatattataagattttctagcatt 42
||||| |||||||||||||||| |||||||||||
Sbjct: 9 tcctccgtttcatattataagactttctagcatt 42
>RF00906;MIR1122;AC223445.1/72991-73152 4538:Oryza glaberrima
(African rice)
Length = 162
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 9 tcctctgtttcatattataagattttctagcatt 42
||||| |||||||||||||||| |||||||||||
Sbjct: 154 tcctccgtttcatattataagactttctagcatt 121
Score = 50.1 bits (25), Expect = 9e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 10 cctctgtttcatattataagattttctagcatt 42
|||| |||||||||||||||| |||||||||||
Sbjct: 10 cctccgtttcatattataagactttctagcatt 42
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 118 tagaaagtcttataacctgaaacggagggag 148
||||||||||||||| ||||||||||||||
Sbjct: 37 tagaaagtcttataatatgaaacggagggag 7
>RF00906;MIR1122;AC145367.2/80971-81106 39947:Oryza sativa Japonica
Group
Length = 136
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 9 tcctctgtttcatattataagattttctagcatt 42
||||| |||||||||||||||| |||||||||||
Sbjct: 128 tcctcagtttcatattataagactttctagcatt 95
Score = 50.1 bits (25), Expect = 9e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 10 cctctgtttcatattataagattttctagcatt 42
|||| |||||||||||||||| |||||||||||
Sbjct: 10 cctccgtttcatattataagactttctagcatt 42
Score = 48.1 bits (24), Expect = 4e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 118 tagaaagtcttataacctgaaacggagggagcagta 153
||||||||||||||| |||||||||||||| ||||
Sbjct: 37 tagaaagtcttataatatgaaacggagggagtagta 2
>RF00906;MIR1122;AAAA02022921.1/15118-15235 39946:Oryza sativa
Indica Group
Length = 118
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 9 tcctctgtttcatattataagattttctagcatt 42
||||| |||||||||||||||| |||||||||||
Sbjct: 110 tcctccgtttcatattataagactttctagcatt 77
>RF00906;MIR1122;AAAA02024119.1/11927-11764 39946:Oryza sativa
Indica Group
Length = 164
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 9 tcctctgtttcatattataagattttctagcatt 42
||||| |||||||||||||||| |||||||||||
Sbjct: 9 tcctccgtttcatattataagactttctagcatt 42
Score = 50.1 bits (25), Expect = 9e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 10 cctctgtttcatattataagattttctagcatt 42
|||| |||||||||||||||| |||||||||||
Sbjct: 155 cctccgtttcatattataagactttctagcatt 123
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 118 tagaaagtcttataacctgaaacggagggag 148
||||||||||||||| ||||||||||||||
Sbjct: 128 tagaaagtcttataatatgaaacggagggag 158
>RF00906;MIR1122;AP008215.1/18276529-18276660 39947:Oryza sativa
Japonica Group
Length = 132
Score = 50.1 bits (25), Expect = 9e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 10 cctctgtttcatattataagattttctagcatt 42
|||| |||||||||||||||| |||||||||||
Sbjct: 10 cctccgtttcatattataagactttctagcatt 42
Score = 48.1 bits (24), Expect = 4e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 118 tagaaagtcttataacctgaaacggagggagcagta 153
||||||||||||||| |||||||||||||| ||||
Sbjct: 37 tagaaagtcttataatatgaaacggagggagtagta 2
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 16 tttcatattataagattttctagcattatcca 47
||||||||||||||| ||||||||||| ||||
Sbjct: 117 tttcatattataagactttctagcattgtcca 86
>RF00906;MIR1122;AAAA02027724.1/15381-15250 39946:Oryza sativa
Indica Group
Length = 132
Score = 50.1 bits (25), Expect = 9e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 10 cctctgtttcatattataagattttctagcatt 42
|||| |||||||||||||||| |||||||||||
Sbjct: 123 cctccgtttcatattataagactttctagcatt 91
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 16 tttcatattataagattttctagcattatcca 47
||||||||||||||| ||||||||||| ||||
Sbjct: 16 tttcatattataagactttctagcattgtcca 47
Score = 48.1 bits (24), Expect = 4e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 118 tagaaagtcttataacctgaaacggagggagcagta 153
||||||||||||||| |||||||||||||| ||||
Sbjct: 96 tagaaagtcttataatatgaaacggagggagtagta 131
>RF00906;MIR1122;AP003023.2/81435-81277 39947:Oryza sativa
Japonica Group
Length = 159
Score = 50.1 bits (25), Expect = 9e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 10 cctctgtttcatattataagattttctag 38
||||||||||||||||||||| |||||||
Sbjct: 10 cctctgtttcatattataagactttctag 38
>RF00906;MIR1122;AP005308.3/147987-147826 39947:Oryza sativa
Japonica Group
Length = 162
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 114 atgttagaaagtcttataacctgaaacggagg 145
||||||||||||||||||| |||||||||||
Sbjct: 41 atgttagaaagtcttataatatgaaacggagg 10
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 118 tagaaagtcttataacctgaaacggagggag 148
||||||||||||||| ||||||||||||||
Sbjct: 126 tagaaagtcttataatatgaaacggagggag 156
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 9 tcctctgtttcatattataagattttctagcatt 42
||||| |||||||||||||||| |||||| ||||
Sbjct: 9 tcctccgtttcatattataagactttctaacatt 42
Score = 44.1 bits (22), Expect = 5e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 10 cctctgtttcatattataagattttctagcattatcca 47
|||| |||||||||||||||| ||||||| ||| ||||
Sbjct: 153 cctccgtttcatattataagactttctagaattgtcca 116
>RF00906;MIR1122;ABRL01002327.1/13187-13322 65489:Oryza barthii
Length = 136
Score = 48.1 bits (24), Expect = 4e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 9 tcctctgtttcatattataagattttctagcattatccac 48
||||| |||||||||||||||| ||||||| |||| ||||
Sbjct: 9 tcctccgtttcatattataagactttctagtattacccac 48
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 10 cctctgtttcatattataagattttctagcattatccac 48
|||| |||||| ||||||||| |||||||||||| ||||
Sbjct: 127 cctccgtttcaaattataagactttctagcattacccac 89
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 118 tagaaagtcttataacctgaaacggagggag 148
||||||||||||||| ||||||||||||||
Sbjct: 100 tagaaagtcttataatttgaaacggagggag 130
>RF00906;MIR1122;AP000492.1/101668-101829 39947:Oryza sativa
Japonica Group
Length = 162
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 118 tagaaagtcttataacctgaaacggagg 145
|||||||||||||||| |||||||||||
Sbjct: 126 tagaaagtcttataacttgaaacggagg 153
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 119 agaaagtcttataacctgaaacggagg 145
||||||||||||||| |||||||||||
Sbjct: 36 agaaagtcttataacttgaaacggagg 10
>RF00906;MIR1122;AAAA02028024.1/19895-19754 39946:Oryza sativa
Indica Group
Length = 142
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 118 tagaaagtcttataacctgaaacggagggag 148
||||||||||||||| ||||||||||||||
Sbjct: 106 tagaaagtcttataatatgaaacggagggag 136
>RF00906;MIR1122;AAAA02036283.1/12137-12272 39946:Oryza sativa
Indica Group
Length = 136
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 10 cctctgtttcatattataagattttctagcattatccac 48
||||||||||||| | ||||| ||||||||||| |||||
Sbjct: 127 cctctgtttcataatgtaagactttctagcattgtccac 89
>RF00906;MIR1122;AAAA02029606.1/4225-4368 39946:Oryza sativa
Indica Group
Length = 144
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 9 tcctctgtttcatattataagattttctagcatt 42
|||||||||||||| |||||| |||||||||||
Sbjct: 9 tcctctgtttcataatataagtctttctagcatt 42
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 10 cctctgtttcatattataagattttctagcatta 43
|||| |||||||| ||||||| ||||||||||||
Sbjct: 135 cctccgtttcataatataagactttctagcatta 102
>RF00906;MIR1122;AACV01025230.1/832-919 39947:Oryza sativa Japonica
Group
Length = 88
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 125 tcttataacctgaaacggagggagca 150
||||||||||||||||||| ||||||
Sbjct: 30 tcttataacctgaaacggatggagca 5
>RF00906;MIR1122;AAAA02021108.1/39171-39038 39946:Oryza sativa
Indica Group
Length = 134
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 9 tcctctgtttcatattataagattttctagcatt 42
|||||||||||||| ||||||| |||| ||||||
Sbjct: 9 tcctctgtttcatactataagactttcaagcatt 42
