miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00426;SCARNA15;ABDC01642996.1/97-188 30608:Microcebus murinus
(gray mouse lemur)
Length = 92
Score = 135 bits (68), Expect = 9e-32
Identities = 71/72 (98%)
Strand = Plus / Plus
Query: 1 tcctacatgaaaaggtagatagaacaggtcttgtttgcaaaataaattcaagacctactt 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19 tcctaaatgaaaaggtagatagaacaggtcttgtttgcaaaataaattcaagacctactt 78
Query: 61 atctaccaacag 72
||||||||||||
Sbjct: 79 atctaccaacag 90
>RF00426;SCARNA15;ABDC01323625.1/886-758 30608:Microcebus murinus
(gray mouse lemur)
Length = 129
Score = 135 bits (68), Expect = 9e-32
Identities = 71/72 (98%)
Strand = Plus / Plus
Query: 1 tcctacatgaaaaggtagatagaacaggtcttgtttgcaaaataaattcaagacctactt 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56 tcctaaatgaaaaggtagatagaacaggtcttgtttgcaaaataaattcaagacctactt 115
Query: 61 atctaccaacag 72
||||||||||||
Sbjct: 116 atctaccaacag 127
>RF00426;SCARNA15;ABDC01414620.1/1491-1629 30608:Microcebus murinus
(gray mouse lemur)
Length = 139
Score = 135 bits (68), Expect = 9e-32
Identities = 71/72 (98%)
Strand = Plus / Plus
Query: 1 tcctacatgaaaaggtagatagaacaggtcttgtttgcaaaataaattcaagacctactt 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 tcctaaatgaaaaggtagatagaacaggtcttgtttgcaaaataaattcaagacctactt 125
Query: 61 atctaccaacag 72
||||||||||||
Sbjct: 126 atctaccaacag 137
>RF00426;SCARNA15;AAGV020357757.1/1133-1034 9361:Dasypus
novemcinctus (nine-banded armadillo)
Length = 100
Score = 129 bits (65), Expect = 6e-30
Identities = 71/73 (97%)
Strand = Plus / Plus
Query: 1 tcctacatgaaaaggtagatagaacaggtcttgtttgcaaaataaattcaagacctactt 60
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 27 tcctatatgaaaaggtagatagaacaggtcttgtttgcaaaatatattcaagacctactt 86
Query: 61 atctaccaacagc 73
|||||||||||||
Sbjct: 87 atctaccaacagc 99
>RF00426;SCARNA15;AAGU02340666.1/908-1033 9785:Loxodonta africana
(African savanna elephant)
Length = 126
Score = 127 bits (64), Expect = 2e-29
Identities = 70/72 (97%)
Strand = Plus / Plus
Query: 1 tcctacatgaaaaggtagatagaacaggtcttgtttgcaaaataaattcaagacctactt 60
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 53 tcctagatgaaaaggtagacagaacaggtcttgtttgcaaaataaattcaagacctactt 112
Query: 61 atctaccaacag 72
||||||||||||
Sbjct: 113 atctaccaacag 124
>RF00426;SCARNA15;AAGV020611566.1/33-113 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 81
Score = 111 bits (56), Expect = 1e-24
Identities = 62/64 (96%)
Strand = Plus / Plus
Query: 10 aaaaggtagatagaacaggtcttgtttgcaaaataaattcaagacctacttatctaccaa 69
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct: 17 aaaaggtagatagaacaggtcttgtttgcaaaatatattcaagacctacttatctaccca 76
Query: 70 cagc 73
||||
Sbjct: 77 cagc 80
>RF00426;SCARNA15;AAPE01262062.1/297-424 59463:Myotis lucifugus
(little brown bat)
Length = 128
Score = 109 bits (55), Expect = 5e-24
Identities = 61/63 (96%)
Strand = Plus / Plus
Query: 10 aaaaggtagatagaacaggtcttgtttgcaaaataaattcaagacctacttatctaccaa 69
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 64 aaaaggtggatagaacaggtcttgtttgcaaaataaattcaagacctacttatcttccaa 123
Query: 70 cag 72
|||
Sbjct: 124 cag 126
>RF00426;SCARNA15;ABRT010960031.1/1022-896 9478:Tarsius syrichta
(Philippine tarsier)
Length = 127
Score = 109 bits (55), Expect = 5e-24
Identities = 64/67 (95%)
Strand = Plus / Plus
Query: 7 atgaaaaggtagatagaacaggtcttgtttgcaaaataaattcaagacctacttatctac 66
|||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 60 atgaaatgttagatagaacagatcttgtttgcaaaataaattcaagacctacttatctac 119
Query: 67 caacagc 73
|||||||
Sbjct: 120 caacagc 126
>RF00426;SCARNA15;AANU01259224.1/203-329 9544:Macaca mulatta (rhesus
monkey)
Length = 127
Score = 105 bits (53), Expect = 8e-23
Identities = 68/73 (93%)
Strand = Plus / Plus
Query: 1 tcctacatgaaaaggtagatagaacaggtcttgtttgcaaaataaattcaagacctactt 60
||||| |||||||| || |||||||||||||||||| |||||||||||||||||||||||
Sbjct: 54 tcctaaatgaaaagataaatagaacaggtcttgtttacaaaataaattcaagacctactt 113
Query: 61 atctaccaacagc 73
||||| |||||||
Sbjct: 114 atctatcaacagc 126
>RF00426;SCARNA15;AAKN02018069.1/1858-1942 10141:Cavia porcellus
(domestic guinea pig)
Length = 85
Score = 105 bits (53), Expect = 8e-23
Identities = 68/73 (93%)
Strand = Plus / Plus
Query: 1 tcctacatgaaaaggtagatagaacaggtcttgtttgcaaaataaattcaagacctactt 60
||||| |||||||||||||||||||||||| ||||||||||| ||| ||||||||||||
Sbjct: 12 tcctaaatgaaaaggtagatagaacaggtcctgtttgcaaaagaaacccaagacctactt 71
Query: 61 atctaccaacagc 73
|||||||||||||
Sbjct: 72 atctaccaacagc 84
>RF00426;SCARNA15;AAGW01181484.1/4968-4842 9986:Oryctolagus
cuniculus (rabbit)
Length = 127
Score = 105 bits (53), Expect = 8e-23
Identities = 68/73 (93%)
Strand = Plus / Plus
Query: 1 tcctacatgaaaaggtagatagaacaggtcttgtttgcaaaataaattcaagacctactt 60
||||| ||||||||||||||||||||||||||||| ||||| || ||||||||||||||
Sbjct: 54 tcctaaatgaaaaggtagatagaacaggtcttgttcgcaaaggaagttcaagacctactt 113
Query: 61 atctaccaacagc 73
|||||||||||||
Sbjct: 114 atctaccaacagc 126
>RF00426;SCARNA15;AANN01732064.1/1528-1403 9365:Erinaceus europaeus
(western European hedgehog)
Length = 126
Score = 99.6 bits (50), Expect = 5e-21
Identities = 69/74 (93%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 1 tcctacatgaaaaggtagatagaacaggtcttgtttgcaaaataaattcaagacctactt 60
||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 54 tcctacatgaaaaggtagatagaacaggtcttg-gtgcaagataaattcaagacctactt 112
Query: 61 atctaccaacagcc 74
||| |||||||||
Sbjct: 113 ctctgccaacagcc 126
>RF00426;SCARNA15;ABGA01163946.1/1947-1823 9601:Pongo abelii
(Sumatran orangutan)
Length = 125
Score = 97.6 bits (49), Expect = 2e-20
Identities = 61/65 (93%)
Strand = Plus / Plus
Query: 1 tcctacatgaaaaggtagatagaacaggtcttgtttgcaaaataaattcaagacctactt 60
||||| || ||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 52 tcctaaattaaaagatagatagaacaggtcttgtttgcaaaataaattcaagatctactt 111
Query: 61 atcta 65
|||||
Sbjct: 112 atcta 116
>RF00426;SCARNA15;CABD01010008.1/10785-10659 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 127
Score = 97.6 bits (49), Expect = 2e-20
Identities = 67/73 (91%)
Strand = Plus / Plus
Query: 1 tcctacatgaaaaggtagatagaacaggtcttgtttgcaaaataaattcaagacctactt 60
||||| |||||| | |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 54 tcctaaatgaaaggatagacagaacaggtcttgtttgcaaaataaattcaagacctactt 113
Query: 61 atctaccaacagc 73
|||||| |||||
Sbjct: 114 gtctaccgacagc 126
>RF00426;SCARNA15;AAGW01384269.1/1466-1381 9986:Oryctolagus
cuniculus (rabbit)
Length = 86
Score = 97.6 bits (49), Expect = 2e-20
Identities = 67/73 (91%)
Strand = Plus / Plus
Query: 1 tcctacatgaaaaggtagatagaacaggtcttgtttgcaaaataaattcaagacctactt 60
||||| |||||||| ||||||||||||||||||||| |||| ||||||||| ||||||||
Sbjct: 13 tcctaaatgaaaagatagatagaacaggtcttgtttacaaagtaaattcaaaacctactt 72
Query: 61 atctaccaacagc 73
|||||||| ||||
Sbjct: 73 atctaccagcagc 85
>RF00426;SCARNA15;ABRT010138948.1/1817-1690 9478:Tarsius syrichta
(Philippine tarsier)
Length = 128
Score = 91.7 bits (46), Expect = 1e-18
Identities = 61/66 (92%)
Strand = Plus / Plus
Query: 8 tgaaaaggtagatagaacaggtcttgtttgcaaaataaattcaagacctacttatctacc 67
||||||||||||||||||| ||||||| || |||||| |||||||||||||||||||||
Sbjct: 62 tgaaaaggtagatagaacaagtcttgtatgaaaaataggttcaagacctacttatctacc 121
Query: 68 aacagc 73
||||||
Sbjct: 122 aacagc 127
>RF00426;SCARNA15;ABRT010179799.1/88-195 9478:Tarsius syrichta
(Philippine tarsier)
Length = 108
Score = 89.7 bits (45), Expect = 5e-18
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 17 agatagaacaggtcttgtttgcaaaataaattcaagacctacttatctaccaacagc 73
||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||
Sbjct: 51 agatagaacaggtcttgtttgaaaagtaaattcaagacctacttatctacctacagc 107
>RF00426;SCARNA15;AAIY01143864.1/664-778 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 115
Score = 89.7 bits (45), Expect = 5e-18
Identities = 66/73 (90%)
Strand = Plus / Plus
Query: 1 tcctacatgaaaaggtagatagaacaggtcttgtttgcaaaataaattcaagacctactt 60
||||| || ||||||||| ||||||||||||||| || ||||||||||||||||||| |
Sbjct: 42 tcctaaattaaaaggtaggtagaacaggtcttgtgagcgaaataaattcaagacctacat 101
Query: 61 atctaccaacagc 73
|||||||||||||
Sbjct: 102 atctaccaacagc 114
>RF00426;SCARNA15;ABRT010511928.1/2990-3114 9478:Tarsius syrichta
(Philippine tarsier)
Length = 125
Score = 81.8 bits (41), Expect = 1e-15
Identities = 56/61 (91%)
Strand = Plus / Plus
Query: 13 aggtagatagaacaggtcttgtttgcaaaataaattcaagacctacttatctaccaacag 72
||||||||| | ||||||||||||||| ||| |||||||||||||||| |||||||||||
Sbjct: 64 aggtagatacagcaggtcttgtttgcagaatgaattcaagacctacttgtctaccaacag 123
Query: 73 c 73
|
Sbjct: 124 c 124
>RF00426;SCARNA15;AAIY01626672.1/2150-2024 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 127
Score = 77.8 bits (39), Expect = 2e-14
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 7 atgaaaaggtagatagaacaggtcttgtttgcaaaataaattcaagacctacttatctac 66
|||||||||||||||||||||||||||| | ||||| ||||||||| ||| |||||||
Sbjct: 60 atgaaaaggtagatagaacaggtcttgtgaacgaaatatattcaagacttacatatctac 119
Query: 67 caacagc 73
|||||||
Sbjct: 120 caacagc 126
>RF00426;SCARNA15;ABDC01578720.1/90-204 30608:Microcebus murinus
(gray mouse lemur)
Length = 115
Score = 69.9 bits (35), Expect = 4e-12
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 21 agaacaggtcttgtttgcaaaataaattcaagacctacttatctaccaaca 71
|||| |||||||| || |||||||||||||| |||||||||||||||||||
Sbjct: 62 agaataggtcttgcttacaaaataaattcaaaacctacttatctaccaaca 112
>RF00426;SCARNA15;AANN01624857.1/5804-5929 9365:Erinaceus europaeus
(western European hedgehog)
Length = 126
Score = 67.9 bits (34), Expect = 2e-11
Identities = 56/62 (90%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 12 aaggtagatagaacaggtcttgtttgcaaaataaattcaagacctacttatctaccaaca 71
|||||||||||||||||||||| | || | ||||||||||||||||||| ||| ||||||
Sbjct: 65 aaggtagatagaacaggtcttggt-gcgagataaattcaagacctacttctctgccaaca 123
Query: 72 gc 73
||
Sbjct: 124 gc 125
>RF00426;SCARNA15;AALT01439725.1/4063-3943 42254:Sorex araneus
(European shrew)
Length = 121
Score = 60.0 bits (30), Expect = 4e-09
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 11 aaaggtagatagaacaggtcttgtttgcaaaataaattcaagacctacttatct 64
||||| |||| ||||||| ||||| |||||| ||||| ||||||||||||||||
Sbjct: 58 aaagggagatggaacaggccttgtgtgcaaagtaaatgcaagacctacttatct 111
>RF00426;SCARNA15;AAQR01276074.1/11068-10953 30611:Otolemur
garnettii (small-eared galago)
Length = 116
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 16 tagatagaacaggtcttgtttgcaaaataaattc 49
|||| ||||||||||||| |||||||||||||||
Sbjct: 58 tagaaagaacaggtcttgattgcaaaataaattc 91
>RF00426;SCARNA15;AALT01344417.1/1325-1208 42254:Sorex araneus
(European shrew)
Length = 118
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 38 caaaataaattcaagacctacttatctaccaa 69
||||| |||||| |||||||||||||||||||
Sbjct: 82 caaaacaaattccagacctacttatctaccaa 113
>RF00426;SCARNA15;AALT01503069.1/3751-3878 42254:Sorex araneus
(European shrew)
Length = 128
Score = 46.1 bits (23), Expect = 6e-05
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 13 aggtagatagaacaggtcttgtttgcaaaataaattcaagacctacttatctaccaaca 71
||||||| |||||||||||||| |||| | | || |||| ||||| ||||||||||||
Sbjct: 67 aggtagaaagaacaggtcttgtgtgcacagtgaacgcaaggcctacgtatctaccaaca 125
>RF00426;SCARNA15;AANN01537542.1/681-795 9365:Erinaceus europaeus
(western European hedgehog)
Length = 115
Score = 46.1 bits (23), Expect = 6e-05
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 19 atagaacaggtcttgtttgcaaaataaattcaagacctacttatctaccaacagc 73
|||||| |||||| | ||||| |||||||||||| |||||||||| | ||||||
Sbjct: 60 atagaataggtctcgcatgcaagataaattcaagaactacttatcttcaaacagc 114
