miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00005;tRNA;AABR04003731.1/2218-2146 :
Length = 73
Score = 79.8 bits (40), Expect = 4e-15
Identities = 49/52 (94%)
Strand = Plus / Plus
Query: 13 ggagagatggctcagcagttaagagcactgactgtttttccagaggtcctga 64
|||||||||||||||||||||||||||||| ||| ||||| |||||||||||
Sbjct: 1 ggagagatggctcagcagttaagagcactggctgcttttctagaggtcctga 52
>RF00005;tRNA;AAHX01041629.1/25633-25698 :
Length = 66
Score = 71.9 bits (36), Expect = 9e-13
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 16 gagatggctcagcagttaagagcactgactgtttttccagaggtcctg 63
|||||||||||||||||||||||||||| || ||||| ||||||||||
Sbjct: 1 gagatggctcagcagttaagagcactgagtgcttttcaagaggtcctg 48
>RF00015;U4;AABR04001466.1/25624-25464 10116:Rattus norvegicus
(Norway rat)
Length = 161
Score = 71.9 bits (36), Expect = 9e-13
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 9 ggctggagagatggctcagcagttaagagcactgactgtttttccagaggtcctga 64
||||||||||||||||||| ||||||||||||||||| | ||||| |||||||||
Sbjct: 80 ggctggagagatggctcagtggttaagagcactgactgctcttccaaaggtcctga 135
>RF00005;tRNA;AAHX01077052.1/11963-12029 :
Length = 67
Score = 69.9 bits (35), Expect = 3e-12
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 13 ggagagatggctcagcagttaagagcactgactgtttttccagaggtcctg 63
|||||||||||||||| |||||||||||||||| | ||||||||||||||
Sbjct: 1 ggagagatggctcagcgattaagagcactgactgctcttccagaggtcctg 51
>RF00005;tRNA;AAHX01051651.1/13700-13764 :
Length = 65
Score = 67.9 bits (34), Expect = 1e-11
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 18 gatggctcagcagttaagagcactgactgtttttccagaggtcctg 63
|||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 1 gatggctcagtggttaagagcactgactgcttttccagaggtcctg 46
>RF00005;tRNA;AABR04065012.1/6558-6493 :
Length = 66
Score = 67.9 bits (34), Expect = 1e-11
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 19 atggctcagcagttaagagcactgactgtttttccagaggtc 60
|||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 1 atggctcagcggttaagagcactgactgttcttccagaggtc 42
>RF00005;tRNA;AAHX01072941.1/6810-6743 :
Length = 68
Score = 63.9 bits (32), Expect = 2e-10
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 17 agatggctcagcagttaagagcactgactgtttttccagaggtcctga 64
||||||||||| |||||||||| |||||||| |||||||||||||||
Sbjct: 1 agatggctcagtggttaagagcattgactgttcttccagaggtcctga 48
>RF00100;7SK;AC160411.8/123410-123103 10090:Mus musculus (house
mouse)
Length = 308
Score = 63.9 bits (32), Expect = 2e-10
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 9 ggctggagagatggctcagcagttaagagcactgactgtttttccagaggtcctga 64
||||||||||||||||||| ||||||| ||||||||| | ||||| |||||||||
Sbjct: 251 ggctggagagatggctcagtggttaagaacactgactgctcttccaaaggtcctga 306
>RF00005;tRNA;AC107098.6/23604-23671 :
Length = 68
Score = 61.9 bits (31), Expect = 8e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 34 agagcactgactgtttttccagaggtcctga 64
|||||||||||||||||||||||||||||||
Sbjct: 17 agagcactgactgtttttccagaggtcctga 47
>RF00005;tRNA;AC154566.2/36961-37027 :
Length = 67
Score = 61.9 bits (31), Expect = 8e-10
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 15 agagatggctcagcagttaagagcactgactgtttttccagaggtcc 61
|||||||||||||| ||||||||||||| ||| | ||||||||||||
Sbjct: 3 agagatggctcagcggttaagagcactggctgctcttccagaggtcc 49
>RF00100;7SK;CAAA01021056.1/19018-18771 10090:Mus musculus (house
mouse)
Length = 248
Score = 60.0 bits (30), Expect = 3e-09
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 9 ggctggagagatggctcagcagttaagagcactgactg 46
|||||| ||||||||||||||| |||||||||||||||
Sbjct: 204 ggctggtgagatggctcagcaggtaagagcactgactg 241
>RF00005;tRNA;AAHX01092426.1/27349-27280 :
Length = 70
Score = 58.0 bits (29), Expect = 1e-08
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 16 gagatggctcagcagttaagagcactgactgtttttccagaggtcctga 64
|||||||||||| || ||||||||||| || |||||||||||||||||
Sbjct: 1 gagatggctcagtggtaaagagcactgattgcttttccagaggtcctga 49
>RF00005;tRNA;CAAA01157167.1/12447-12514 :
Length = 68
Score = 58.0 bits (29), Expect = 1e-08
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 20 tggctcagcagttaagagcactgactgtttttccagaggtcctga 64
|||||||| ||||||||||||||||| | |||||||||||||||
Sbjct: 3 tggctcagtggttaagagcactgactgctcttccagaggtcctga 47
>RF00005;tRNA;AAHX01091105.1/26950-27024 :
Length = 75
Score = 56.0 bits (28), Expect = 5e-08
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 20 tggctcagcagttaagagcactgactgtttttccagaggtcctg 63
||||||||||||||||||||||||||| | ||||| ||| ||||
Sbjct: 10 tggctcagcagttaagagcactgactgctcttccaaaggacctg 53
>RF00005;tRNA;AAHX01066260.1/1828-1900 :
Length = 73
Score = 54.0 bits (27), Expect = 2e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 30 gttaagagcactgactgtttttccagaggtcctga 64
||||||||||||||||| | |||||||||||||||
Sbjct: 18 gttaagagcactgactgctcttccagaggtcctga 52
>RF00005;tRNA;AAHX01050080.1/11400-11334 :
Length = 67
Score = 54.0 bits (27), Expect = 2e-07
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 17 agatggctcagcagttaagagcactgactgtttttccagaggtcctg 63
||||||||||| ||||||||||||||||| | ||||||||| ||||
Sbjct: 1 agatggctcagtagttaagagcactgacttctcttccagaggccctg 47
>RF00005;tRNA;AABR04096067.1/1552-1485 :
Length = 68
Score = 54.0 bits (27), Expect = 2e-07
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 18 gatggctcagcagttaagagcactgactgtttttccagaggtcctga 64
||||||||||| |||||||||||||||| | ||||||||||||||
Sbjct: 1 gatggctcagcggttaagagcactgactactcctccagaggtcctga 47
>RF00340;SNORA36;AC124020.2/73726-73843 10090:Mus musculus (house
mouse)
Length = 118
Score = 54.0 bits (27), Expect = 2e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 10 gctggagagatggctcagcagttaagagcac 40
||||| |||||||||||||||||||||||||
Sbjct: 83 gctggggagatggctcagcagttaagagcac 113
>RF00005;tRNA;AABR04027838.1/3056-3128 :
Length = 73
Score = 52.0 bits (26), Expect = 8e-07
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 18 gatggctcagcagttaagagcactgactgtttttccagaggtcctg 63
||||||| ||||||||||||||||| ||| | ||||||||| ||||
Sbjct: 6 gatggcttagcagttaagagcactggctgctcttccagaggacctg 51
>RF00005;tRNA;AAHX01040457.1/18418-18351 :
Length = 68
Score = 52.0 bits (26), Expect = 8e-07
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 19 atggctcagcagttaagagcactgactgtttttccagaggtcctga 64
||||||||| ||||||||||||||||| | |||||||||| ||||
Sbjct: 4 atggctcagtggttaagagcactgactgctcttccagaggttctga 49
>RF00005;tRNA;CU424437.12/31929-31863 :
Length = 67
Score = 52.0 bits (26), Expect = 8e-07
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 13 ggagagatggctcagcagttaagagcactgactgtttttccagagg 58
|||||||||||| || ||||||||||||||||| | |||||||||
Sbjct: 1 ggagagatggcttagtggttaagagcactgactgctcttccagagg 46
>RF00005;tRNA;AAHX01071409.1/49491-49423 :
Length = 69
Score = 50.1 bits (25), Expect = 3e-06
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 20 tggctcagcagttaagagcactgactgtttttccagaggtcctga 64
|||||||| ||||||||||||||||| | ||||||||| |||||
Sbjct: 4 tggctcagtggttaagagcactgactgctcttccagaggccctga 48
>RF00005;tRNA;AAHX01072537.1/1332-1402 :
Length = 71
Score = 50.1 bits (25), Expect = 3e-06
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 20 tggctcagcagttaagagcactgactgtttttccagaggtcctga 64
||||||||| ||||| ||||||||||| | ||||||||| |||||
Sbjct: 8 tggctcagcggttaatagcactgactgctcttccagaggccctga 52
>RF00100;7SK;CAAA01166791.1/2012-1745 10090:Mus musculus (house
mouse)
Length = 268
Score = 50.1 bits (25), Expect = 3e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 5 aagaggctggagagatggctcagcagttaagag 37
||||||||| ||||||| |||||||||||||||
Sbjct: 180 aagaggctgaagagatgtctcagcagttaagag 212
>RF00005;tRNA;AAHX01020796.1/12734-12668 :
Length = 67
Score = 48.1 bits (24), Expect = 1e-05
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 17 agatggctcagcagttaagagcactgactgtttttccagaggtcctga 64
||||||||||| ||||||||||||| || | |||||||||||||||
Sbjct: 1 agatggctcagtggttaagagcactggctactcttccagaggtcctga 48
>RF00005;tRNA;AAHX01461018.1/251-185 :
Length = 67
Score = 48.1 bits (24), Expect = 1e-05
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 13 ggagagatggctcagcagttaagagcactgactgtttttccagaggtcctga 64
||||||||||||||| ||||||||| |||||| | || ||||||||||||
Sbjct: 1 ggagagatggctcagtggttaagagcgctgacttctctttcagaggtcctga 52
>RF00005;tRNA;AABR04015772.1/30101-30162 :
Length = 62
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 18 gatggctcagcagttaagagcact 41
||||||||||||||||||||||||
Sbjct: 1 gatggctcagcagttaagagcact 24
>RF00005;tRNA;CAAA01123304.1/6479-6413 :
Length = 67
Score = 48.1 bits (24), Expect = 1e-05
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 13 ggagagatggctcagcagttaagagcactgactgtttttccagaggtcctga 64
|||||||| |||||| ||||||||||||| || | |||||||||||||||
Sbjct: 1 ggagagatagctcagaggttaagagcactggatgctcttccagaggtcctga 52
>RF00005;tRNA;AABR04183477.1/149-216 :
Length = 68
Score = 46.1 bits (23), Expect = 5e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 30 gttaagagcactgactgtttttccagaggtcctga 64
||||||||||||||||| | |||||||| ||||||
Sbjct: 13 gttaagagcactgactgctcttccagagatcctga 47
>RF00005;tRNA;AAHX01082141.1/280-344 :
Length = 65
Score = 46.1 bits (23), Expect = 5e-05
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 18 gatggctcagcagttaagagcactgactgtttttccagaggtcctga 64
|||||||||| ||| ||||||||||||| | |||||||||| ||||
Sbjct: 1 gatggctcagaggtttagagcactgactgctcttccagaggttctga 47
>RF00005;tRNA;AAHX01051625.1/36361-36291 :
Length = 71
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 tggctcagcagttaagagcact 41
||||||||||||||||||||||
Sbjct: 5 tggctcagcagttaagagcact 26
>RF00005;tRNA;AABR04035055.1/16988-16916 :
Length = 73
Score = 44.1 bits (22), Expect = 2e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 26 agcagttaagagcactgactgtttttccagaggtcctg 63
||||||||||||||||| ||| |||| |||||| ||||
Sbjct: 14 agcagttaagagcactggctgcttttacagaggccctg 51
>RF00005;tRNA;AC094784.13/2484-2551 :
Length = 68
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 17 agatggctcagcagttaagagcactg 42
|||||||||||| |||||||||||||
Sbjct: 5 agatggctcagcggttaagagcactg 30
>RF00005;tRNA;AABR04001160.1/34663-34728 :
Length = 66
Score = 44.1 bits (22), Expect = 2e-04
Identities = 44/50 (88%), Gaps = 1/50 (2%)
Strand = Plus / Plus
Query: 15 agagatggctcagcagttaagagcactgactgtttttccagaggtcctga 64
||||||||||||| |||| |||||||||||| |||||||||||||||
Sbjct: 3 agagatggctcagtggtta-gagcactgactgcgcttccagaggtcctga 51
>RF00005;tRNA;AABR04057490.1/5367-5433 :
Length = 67
Score = 44.1 bits (22), Expect = 2e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 31 ttaagagcactgactgtttttccagaggtcctga 64
|||||||||||||||| | ||||||||| |||||
Sbjct: 15 ttaagagcactgactgctcttccagagggcctga 48
>RF00005;tRNA;AAHX01020593.1/30733-30667 :
Length = 67
Score = 44.1 bits (22), Expect = 2e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 30 gttaagagcactgactgtttttccagaggtcctg 63
||||||||||||||||| | ||||||||| ||||
Sbjct: 14 gttaagagcactgactgctcttccagaggacctg 47
>RF00005;tRNA;AAHY01107243.1/6262-6192 :
Length = 71
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 13 ggagagatggctcagcagttaagagcactg 42
||||||||||||||| |||||||||||||
Sbjct: 1 ggagagatggctcagtggttaagagcactg 30
>RF00005;tRNA;AAHX01083707.1/3286-3216 :
Length = 71
Score = 42.1 bits (21), Expect = 8e-04
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 17 agatggctcagcagttaagagcactgactgtttttccagag 57
|||| |||||| ||||||||||||||||| |||| |||||
Sbjct: 5 agatagctcagtggttaagagcactgactgcttttgcagag 45
>RF00005;tRNA;CAAA01000009.1/39193-39129 :
Length = 65
Score = 42.1 bits (21), Expect = 8e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 20 tggctcagcagttaagagcactgactgtt 48
||||||||| ||||||||||||| |||||
Sbjct: 3 tggctcagcggttaagagcactggctgtt 31
>RF00005;tRNA;AAHY01047864.1/7110-7179 :
Length = 70
Score = 42.1 bits (21), Expect = 8e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 18 gatggctcagcagttaagagcactgactg 46
|||||||||| |||||||||||||||||
Sbjct: 6 gatggctcagtggttaagagcactgactg 34
>RF00100;7SK;AABR04077292.1/932-659 10116:Rattus norvegicus (Norway
rat)
Length = 274
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 10 gctggagagatggctcagcag 30
|||||||||||||||||||||
Sbjct: 230 gctggagagatggctcagcag 250
