miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00005;tRNA;AAHX01077052.1/11963-12029 :
Length = 67
Score = 77.8 bits (39), Expect = 3e-14
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 23 ggagagatggctcagcaattaagagcactggttgcccttcccgagttcctgagttcaatt 82
|||||||||||||||| ||||||||||||| ||| ||||| ||| ||||| ||||||||
Sbjct: 1 ggagagatggctcagcgattaagagcactgactgctcttccagaggtcctgggttcaatt 60
Query: 83 cccagca 89
|||||||
Sbjct: 61 cccagca 67
>RF00005;tRNA;AABR04003731.1/2218-2146 :
Length = 73
Score = 73.8 bits (37), Expect = 4e-13
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 23 ggagagatggctcagcaattaagagcactggttgcccttcccgagttcctgagttcaatt 82
||||||||||||||||| ||||||||||||| ||| ||| ||| ||||||||||||||
Sbjct: 1 ggagagatggctcagcagttaagagcactggctgcttttctagaggtcctgagttcaatt 60
Query: 83 cccag 87
|||||
Sbjct: 61 cccag 65
>RF00015;U4;AABR04001466.1/25624-25464 10116:Rattus norvegicus
(Norway rat)
Length = 161
Score = 73.8 bits (37), Expect = 4e-13
Identities = 71/81 (87%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 17 tgggctggagagatggctcagcaattaagagcactggttgcccttcccgagttcctgagt 76
||||||||||||||||||||| |||||||||||| ||| ||||| || ||||||||
Sbjct: 78 tgggctggagagatggctcagtggttaagagcactgactgctcttccaaaggtcctgagt 137
Query: 77 tcaattcccagcaaccacatg 97
|| ||||||||||||||||||
Sbjct: 138 tc-attcccagcaaccacatg 157
>RF00005;tRNA;AABR04103438.1/2313-2379 :
Length = 67
Score = 61.9 bits (31), Expect = 2e-09
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 41 ttaagagcactggttgcccttcccgagttcctgagttcaattcccagcaaccaca 95
|||||| |||||| | | ||||| ||| |||||||||||||||||||||||||||
Sbjct: 13 ttaagaacactggcttctcttccagaggtcctgagttcaattcccagcaaccaca 67
>RF00005;tRNA;CAAA01157167.1/12447-12514 :
Length = 68
Score = 61.9 bits (31), Expect = 2e-09
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 41 ttaagagcactggttgcccttcccgagttcctgagttcaattcccagcaaccaca 95
|||||||||||| ||| ||||| ||| |||||||||||||||||||||| ||||
Sbjct: 14 ttaagagcactgactgctcttccagaggtcctgagttcaattcccagcaagcaca 68
>RF00005;tRNA;AC154566.2/36961-37027 :
Length = 67
Score = 61.9 bits (31), Expect = 2e-09
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 25 agagatggctcagcaattaagagcactggttgcccttcccgagttcctgagttcaattc 83
|||||||||||||| ||||||||||||| ||| ||||| ||| ||| |||||||||||
Sbjct: 3 agagatggctcagcggttaagagcactggctgctcttccagaggtcccgagttcaattc 61
>RF00005;tRNA;AABR04006582.1/17507-17438 :
Length = 70
Score = 60.0 bits (30), Expect = 6e-09
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 23 ggagagatggctcagcaattaagagcactggttgcccttcccgagttcctgagttcaatt 82
|||| |||||||||| ||||||||||||||||| ||| | ||| ||||| ||||||||
Sbjct: 1 ggagcgatggctcagtggttaagagcactggttgctcttgcagaggtcctgggttcaatt 60
Query: 83 cccagc 88
||||||
Sbjct: 61 cccagc 66
>RF00005;tRNA;AABR04057490.1/5367-5433 :
Length = 67
Score = 60.0 bits (30), Expect = 6e-09
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 30 tggctcagcaattaagagcactggttgcccttcccgagttcctgagttcaattcccagca 89
|||||||| ||||||||||||| ||| ||||| ||| ||||||||||||||||||||
Sbjct: 4 tggctcagtgattaagagcactgactgctcttccagagggcctgagttcaattcccagca 63
Query: 90 ac 91
||
Sbjct: 64 ac 65
>RF00005;tRNA;AAHX01091105.1/26950-27024 :
Length = 75
Score = 60.0 bits (30), Expect = 6e-09
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 30 tggctcagcaattaagagcactggttgcccttcccgagttcctgagttcaattcccagca 89
|||||||||| |||||||||||| ||| ||||| || |||| |||||||||||||||
Sbjct: 10 tggctcagcagttaagagcactgactgctcttccaaaggacctgggttcaattcccagca 69
Query: 90 accaca 95
||||||
Sbjct: 70 accaca 75
>RF00005;tRNA;AABR04010134.1/27881-27981 :
Length = 101
Score = 58.0 bits (29), Expect = 2e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 55 tgcccttcccgagttcctgagttcaattcccagcaaccaca 95
||||||||| ||| ||||| |||||||||||||||||||||
Sbjct: 61 tgcccttccggaggtcctgggttcaattcccagcaaccaca 101
>RF00005;tRNA;AAHX01040457.1/18418-18351 :
Length = 68
Score = 58.0 bits (29), Expect = 2e-08
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 41 ttaagagcactggttgcccttcccgagttcctgagttcaattcccagcaacca 93
|||||||||||| ||| ||||| ||| | |||||||||||||||||||||||
Sbjct: 16 ttaagagcactgactgctcttccagaggttctgagttcaattcccagcaacca 68
>RF00005;tRNA;AC094784.13/2484-2551 :
Length = 68
Score = 56.0 bits (28), Expect = 9e-08
Identities = 56/64 (87%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 27 agatggctcagcaattaagagcactgg-ttgcccttcccgagttcctgagttcaattccc 85
|||||||||||| ||||||||||||| ||| ||||| || |||||||||||||||||
Sbjct: 5 agatggctcagcggttaagagcactggcttggtcttccaaaggtcctgagttcaattccc 64
Query: 86 agca 89
||||
Sbjct: 65 agca 68
>RF00005;tRNA;AAHX01066260.1/1828-1900 :
Length = 73
Score = 56.0 bits (28), Expect = 9e-08
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 41 ttaagagcactggttgcccttcccgagttcctgagttcaattcccagcaacc 92
|||||||||||| ||| ||||| ||| |||||||||||| |||||||||||
Sbjct: 19 ttaagagcactgactgctcttccagaggtcctgagttcaaatcccagcaacc 70
>RF00005;tRNA;AABR04027838.1/3056-3128 :
Length = 73
Score = 56.0 bits (28), Expect = 9e-08
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 28 gatggctcagcaattaagagcactggttgcccttcccgagttcctgagttcaattcccag 87
||||||| |||| ||||||||||||| ||| ||||| ||| |||| |||||| ||||||
Sbjct: 6 gatggcttagcagttaagagcactggctgctcttccagaggacctgggttcaagtcccag 65
Query: 88 caaccaca 95
||| ||||
Sbjct: 66 caatcaca 73
>RF00005;tRNA;AABR04183477.1/149-216 :
Length = 68
Score = 54.0 bits (27), Expect = 4e-07
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 41 ttaagagcactggttgcccttcccgagttcctgagttcaattcccagcaaccaca 95
|||||||||||| ||| ||||| ||| |||||||||||| |||||| |||||||
Sbjct: 14 ttaagagcactgactgctcttccagagatcctgagttcaaatcccagtaaccaca 68
>RF00005;tRNA;AAHX01041629.1/25633-25698 :
Length = 66
Score = 54.0 bits (27), Expect = 4e-07
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 26 gagatggctcagcaattaagagcactggttgcccttcccgagttcctgagttcaattccc 85
|||||||||||||| |||||||||||| ||| ||| ||| ||||| |||||||||||
Sbjct: 1 gagatggctcagcagttaagagcactgagtgcttttcaagaggtcctgggttcaattccc 60
Query: 86 agc 88
|||
Sbjct: 61 agc 63
>RF00005;tRNA;CAAA01123304.1/6479-6413 :
Length = 67
Score = 54.0 bits (27), Expect = 4e-07
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 23 ggagagatggctcagcaattaagagcactggttgcccttcccgagttcctgagttcaatt 82
|||||||| |||||| ||||||||||||| ||| ||||| ||| |||||||||||| |
Sbjct: 1 ggagagatagctcagaggttaagagcactggatgctcttccagaggtcctgagttcaaat 60
Query: 83 cccagca 89
| |||||
Sbjct: 61 ctcagca 67
>RF00005;tRNA;AAHX01071409.1/49491-49423 :
Length = 69
Score = 52.0 bits (26), Expect = 1e-06
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 41 ttaagagcactggttgcccttcccgagttcctgagttcaattcccagcaa 90
|||||||||||| ||| ||||| ||| |||||||||||||||||||||
Sbjct: 15 ttaagagcactgactgctcttccagaggccctgagttcaattcccagcaa 64
>RF00005;tRNA;AABR04008466.1/3097-3028 :
Length = 70
Score = 52.0 bits (26), Expect = 1e-06
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 46 agcactggttgcccttcccgagttcctgagttcaattcccagcaaccaca 95
|||||||| ||| ||||| ||| |||| |||||||||||||||||||||
Sbjct: 21 agcactggctgctcttccagaggccctgggttcaattcccagcaaccaca 70
>RF00005;tRNA;AABR04050065.1/4525-4597 :
Length = 73
Score = 50.1 bits (25), Expect = 6e-06
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 41 ttaagagcactggttgcccttcccgagttcctgagttcaattcccagca 89
||||||||||||| ||| ||||| ||| |||| |||||||||||||||
Sbjct: 19 ttaagagcactggctgctcttccagaggccctgggttcaattcccagca 67
>RF00005;tRNA;AAHX01050080.1/11400-11334 :
Length = 67
Score = 50.1 bits (25), Expect = 6e-06
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 27 agatggctcagcaattaagagcactggttgcccttcccgagttcctgagttcaattccca 86
||||||||||| | |||||||||||| | | ||||| ||| |||| ||||||||||||
Sbjct: 1 agatggctcagtagttaagagcactgacttctcttccagaggccctgggttcaattccca 60
Query: 87 gcaac 91
|||||
Sbjct: 61 gcaac 65
>RF00005;tRNA;AABR04139188.1/2146-2043 :
Length = 104
Score = 50.1 bits (25), Expect = 6e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 59 cttcccgagttcctgagttcaattcccagcaaccaca 95
||||| ||| |||||||||||| ||||||||||||||
Sbjct: 68 cttccagaggtcctgagttcaaatcccagcaaccaca 104
>RF00005;tRNA;AABR04065012.1/6558-6493 :
Length = 66
Score = 50.1 bits (25), Expect = 6e-06
Identities = 56/65 (86%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 29 atggctcagcaattaagagcactggttgcccttcccgagttcctgagttcaattcccagc 88
|||||||||| |||||||||||| || ||||| ||| || |||||||||||||||||
Sbjct: 1 atggctcagcggttaagagcactgactgttcttccagaggtc-tgagttcaattcccagc 59
Query: 89 aacca 93
|||||
Sbjct: 60 aacca 64
>RF00005;tRNA;AABR04062805.1/12294-12230 :
Length = 65
Score = 50.1 bits (25), Expect = 6e-06
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 41 ttaagagcactggttgcccttcccgagttcctgagttcaattcccagca 89
|||||| |||||| ||| ||||| ||| ||||||||||||| |||||||
Sbjct: 14 ttaagaacactggctgctcttccagaggtcctgagttcaatccccagca 62
>RF00005;tRNA;AAHX01072537.1/1332-1402 :
Length = 71
Score = 48.1 bits (24), Expect = 2e-05
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 30 tggctcagcaattaagagcactggttgcccttcccgagttcctgagttcaattcccagca 89
||||||||| |||| ||||||| ||| ||||| ||| ||||||||||| ||||||||
Sbjct: 8 tggctcagcggttaatagcactgactgctcttccagaggccctgagttcaaatcccagca 67
Query: 90 acca 93
||||
Sbjct: 68 acca 71
>RF00005;tRNA;AABR04096067.1/1552-1485 :
Length = 68
Score = 48.1 bits (24), Expect = 2e-05
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 28 gatggctcagcaattaagagcactggttgcccttcccgagttcctgagttcaattcccag 87
||||||||||| |||||||||||| | | | ||| ||| ||||||||||||||| |||
Sbjct: 1 gatggctcagcggttaagagcactgactactcctccagaggtcctgagttcaattctcag 60
Query: 88 caaccaca 95
|||||||
Sbjct: 61 taaccaca 68
>RF00005;tRNA;AAHX01336191.1/758-657 :
Length = 102
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 59 cttcccgagttcctgagttcaattcccagcaaccac 94
||||| ||| |||||||||||| |||||||||||||
Sbjct: 66 cttccagaggtcctgagttcaaatcccagcaaccac 101
>RF00005;tRNA;AABR04070297.1/11943-11874 :
Length = 70
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 69 tcctgagttcaattcccagcaaccaca 95
||||| |||||||||||||||||||||
Sbjct: 44 tcctgggttcaattcccagcaaccaca 70
>RF00005;tRNA;AAHX01018532.1/1996-2068 :
Length = 73
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 69 tcctgagttcaattcccagcaac 91
|||||||||||||||||||||||
Sbjct: 47 tcctgagttcaattcccagcaac 69
>RF00005;tRNA;AAHY01096571.1/315-422 :
Length = 108
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 69 tcctgagttcaattcccagcaaccaca 95
|||||||||||| ||||||||||||||
Sbjct: 82 tcctgagttcaaatcccagcaaccaca 108
>RF00005;tRNA;AAKN02013797.1/9936-10007 :
Length = 72
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 69 tcctgagttcaattcccagcaac 91
|||||||||||||||||||||||
Sbjct: 45 tcctgagttcaattcccagcaac 67
>RF00340;SNORA36;AC124020.2/73726-73843 10090:Mus musculus (house
mouse)
Length = 118
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 20 gctggagagatggctcagcaattaagagcac 50
||||| |||||||||||||| ||||||||||
Sbjct: 83 gctggggagatggctcagcagttaagagcac 113
>RF00100;7SK;CAAA01021056.1/19018-18771 10090:Mus musculus (house
mouse)
Length = 248
Score = 46.1 bits (23), Expect = 9e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 18 gggctggagagatggctcagcaattaagagcactg 52
||||||| |||||||||||||| |||||||||||
Sbjct: 203 gggctggtgagatggctcagcaggtaagagcactg 237
>RF00005;tRNA;AAHX01092426.1/27349-27280 :
Length = 70
Score = 44.1 bits (22), Expect = 4e-04
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 26 gagatggctcagcaattaagagcactggttgcccttcccgagttcctgagttcaattccc 85
|||||||||||| | |||||||||| |||| |||| ||| |||||||||||| ||||
Sbjct: 1 gagatggctcagtggtaaagagcactgattgcttttccagaggtcctgagttcaaatccc 60
Query: 86 ag 87
||
Sbjct: 61 ag 62
>RF00005;tRNA;AAHY01107243.1/6262-6192 :
Length = 71
Score = 44.1 bits (22), Expect = 4e-04
Identities = 59/71 (83%), Gaps = 4/71 (5%)
Strand = Plus / Plus
Query: 23 ggagagatggctcagcaattaagagcactgg----ttgcccttcccgagttcctgagttc 78
||||||||||||||| ||||||||||||| |||| ||||| ||| |||| ||||
Sbjct: 1 ggagagatggctcagtggttaagagcactggctgcttgctcttccagaggccctgggttc 60
Query: 79 aattcccagca 89
|||||||||||
Sbjct: 61 aattcccagca 71
>RF00100;7SK;AABR04045625.1/13448-13703 10116:Rattus norvegicus
(Norway rat)
Length = 256
Score = 44.1 bits (22), Expect = 4e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 69 tcctgagttcaattcccagcaaccacatgatggctcac 106
|||||||||||| ||||||| || ||||| ||||||||
Sbjct: 201 tcctgagttcaaatcccagctactacatggtggctcac 238
