miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>50218_osa-miRf11003-akr:pmrd
Length = 84
Score = 141 bits (71), Expect = 9e-35
Identities = 74/75 (98%)
Strand = Plus / Plus
Query: 9 gggcctgtttggcacagctctagctccaactccacccctcctggagctggagctcagcca 68
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 10 gggcctgtttggcacagctctagctccagctccacccctcctggagctggagctcagcca 69
Query: 69 aacagtttcagctcc 83
|||||||||||||||
Sbjct: 70 aacagtttcagctcc 84
>50649_osa-miRf11434-akr:pmrd
Length = 82
Score = 127 bits (64), Expect = 1e-30
Identities = 70/72 (97%)
Strand = Plus / Plus
Query: 11 gcctgtttggcacagctctagctccaactccacccctcctggagctggagctcagccaaa 70
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 gcctgtttggcacagctccagctccaactccacccctcctggagctggagctcagccaaa 70
Query: 71 cagtttcagctc 82
|| |||||||||
Sbjct: 71 caatttcagctc 82
>49247_osa-miRf10032-akr:pmrd
Length = 78
Score = 121 bits (61), Expect = 8e-29
Identities = 70/73 (95%)
Strand = Plus / Plus
Query: 10 ggcctgtttggcacagctctagctccaactccacccctcctggagctggagctcagccaa 69
||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||
Sbjct: 6 ggcctgtttggcacagctccagctccagctccacccctcctggagctggagctcagtcaa 65
Query: 70 acagtttcagctc 82
|||||||||||||
Sbjct: 66 acagtttcagctc 78
>49859_osa-miRf10644-akr:pmrd
Length = 107
Score = 103 bits (52), Expect = 2e-23
Identities = 64/68 (94%)
Strand = Plus / Minus
Query: 16 tttggcacagctctagctccaactccacccctcctggagctggagctcagccaaacagtt 75
||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||| ||
Sbjct: 107 tttggcacagctccagctccaactccacccctccttgagctggagctcagacaaacaatt 48
Query: 76 tcagctcc 83
||||||||
Sbjct: 47 tcagctcc 40
>50725_osa-miRf11510-akr:pmrd
Length = 81
Score = 101 bits (51), Expect = 7e-23
Identities = 60/63 (95%)
Strand = Plus / Plus
Query: 11 gcctgtttggcacagctctagctccaactccacccctcctggagctggagctcagccaaa 70
|||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||
Sbjct: 9 gcctgtttggcacagctctagctctagctccacccctcttggagctggagctcagccaaa 68
Query: 71 cag 73
|||
Sbjct: 69 cag 71
Score = 40.1 bits (20), Expect = 2e-04
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 6 taagggcctgtttggcacagctctagctccaa 37
|||||||||||||||| ||||| ||||||||
Sbjct: 78 taagggcctgtttggctgagctccagctccaa 47
>50724_osa-miRf11509-akr:pmrd
Length = 83
Score = 101 bits (51), Expect = 7e-23
Identities = 60/63 (95%)
Strand = Plus / Plus
Query: 11 gcctgtttggcacagctctagctccaactccacccctcctggagctggagctcagccaaa 70
|||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||
Sbjct: 10 gcctgtttggcacagctctagctctagctccacccctcttggagctggagctcagccaaa 69
Query: 71 cag 73
|||
Sbjct: 70 cag 72
Score = 40.1 bits (20), Expect = 2e-04
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 6 taagggcctgtttggcacagctctagctccaa 37
|||||||||||||||| ||||| ||||||||
Sbjct: 79 taagggcctgtttggctgagctccagctccaa 48
>50723_osa-miRf11508-akr:pmrd
Length = 90
Score = 101 bits (51), Expect = 7e-23
Identities = 60/63 (95%)
Strand = Plus / Plus
Query: 11 gcctgtttggcacagctctagctccaactccacccctcctggagctggagctcagccaaa 70
|||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||
Sbjct: 13 gcctgtttggcacagctctagctctagctccacccctcttggagctggagctcagccaaa 72
Query: 71 cag 73
|||
Sbjct: 73 cag 75
Score = 40.1 bits (20), Expect = 2e-04
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 6 taagggcctgtttggcacagctctagctccaa 37
|||||||||||||||| ||||| ||||||||
Sbjct: 82 taagggcctgtttggctgagctccagctccaa 51
>49710_osa-miRf10495-akr:pmrd
Length = 103
Score = 101 bits (51), Expect = 7e-23
Identities = 60/63 (95%)
Strand = Plus / Plus
Query: 21 cacagctctagctccaactccacccctcctggagctggagctcagccaaacagtttcagc 80
|||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||
Sbjct: 4 cacagctctagctccagcttcacccctcttggagctggagctcagccaaacagtttcagc 63
Query: 81 tcc 83
|||
Sbjct: 64 tcc 66
>51155_osa-miRf11940-akr:pmrd
Length = 69
Score = 93.7 bits (47), Expect = 2e-20
Identities = 59/63 (93%)
Strand = Plus / Minus
Query: 15 gtttggcacagctctagctccaactccacccctcctggagctggagctcagccaaacagt 74
|||||||||||||| ||||||||||||||| ||| ||||||| |||||||||||||||||
Sbjct: 63 gtttggcacagctccagctccaactccacctctcgtggagctagagctcagccaaacagt 4
Query: 75 ttc 77
|||
Sbjct: 3 ttc 1
>49426_osa-miRf10211-akr:pmrd
Length = 78
Score = 91.7 bits (46), Expect = 7e-20
Identities = 61/66 (92%)
Strand = Plus / Plus
Query: 13 ctgtttggcacagctctagctccaactccacccctcctggagctggagctcagccaaaca 72
|||||||||||||||| ||||||| ||||||| || |||||||||||| |||||||||||
Sbjct: 10 ctgtttggcacagctccagctccagctccacctcttctggagctggagttcagccaaaca 69
Query: 73 gtttca 78
||||||
Sbjct: 70 gtttca 75
>50483_osa-miRf11268-akr:pmrd
Length = 73
Score = 85.7 bits (43), Expect = 4e-18
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 13 ctgtttggcacagctctagctccaactccacccctcctggagctggagctcagccaaaca 72
|||||||||||||||| ||||| | ||||| | || ||||||||||||||||||||||||
Sbjct: 7 ctgtttggcacagctccagctctagctccatctcttctggagctggagctcagccaaaca 66
Query: 73 gtttcag 79
|||||||
Sbjct: 67 gtttcag 73
>49544_osa-miRf10329-akr:pmrd
Length = 103
Score = 85.7 bits (43), Expect = 4e-18
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 21 cacagctctagctccaactccacccctcctggagctggagctcagccaaacagtttcagc 80
|||||||| | ||| | ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 4 cacagctccaactctagctccacccctcctggagctggagctcagctaaacagtttcagc 63
Query: 81 tcc 83
|||
Sbjct: 64 tcc 66
>50729_osa-miRf11514-akr:pmrd
Length = 77
Score = 75.8 bits (38), Expect = 4e-15
Identities = 62/70 (88%)
Strand = Plus / Minus
Query: 11 gcctgtttggcacagctctagctccaactccacccctcctggagctggagctcagccaaa 70
|||||||||||||||||| | || || |||||| ||||| ||||||||||||||||||
Sbjct: 70 gcctgtttggcacagctccaacttcagttccacctctcctcaagctggagctcagccaaa 11
Query: 71 cagtttcagc 80
||||||||||
Sbjct: 10 cagtttcagc 1
>49383_osa-miRf10168-akr:pmrd
Length = 75
Score = 73.8 bits (37), Expect = 2e-14
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 9 gggcctgtttggcacagctctagctccaactccacccctcctggagctggagctcagcca 68
|||||||||||||||||||||||||| | |||| | | ||||||||||||||||||||
Sbjct: 4 gggcctgtttggcacagctctagctctacttccattctttctggagctggagctcagcca 63
Query: 69 aacag 73
|||||
Sbjct: 64 aacag 68
>49705_osa-miRf10490-akr:pmrd
Length = 75
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 49 ctggagctggagctcagccaaacagtttc 77
|||||||||||||||||||||||||||||
Sbjct: 47 ctggagctggagctcagccaaacagtttc 75
Score = 52.0 bits (26), Expect = 6e-08
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 13 ctgtttggcacagctctagctccaactccacccctcctggagctggagct 62
|||||||||||||||| | ||| |||| |||| || ||||||||||||||
Sbjct: 5 ctgtttggcacagctccaactctaacttcacctctgctggagctggagct 54
>50830_osa-miRf11615-akr:pmrd
Length = 67
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 13 ctgtttggcacagctctagctcca 36
||||||||||||||||||||||||
Sbjct: 67 ctgtttggcacagctctagctcca 44
>50879_osa-miRf11664-akr:pmrd
Length = 75
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 9 gggcctgtttggcacagctctagctcc 35
||||| |||||||||||||||||||||
Sbjct: 72 gggccggtttggcacagctctagctcc 46
>50878_osa-miRf11663-akr:pmrd
Length = 75
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 9 gggcctgtttggcacagctctagctcc 35
||||| |||||||||||||||||||||
Sbjct: 72 gggccggtttggcacagctctagctcc 46
>50570_osa-miRf11355-akr:pmrd
Length = 109
Score = 42.1 bits (21), Expect = 6e-05
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 8 agggcctgtttggcacagctctagctccaactccacc 44
||||||| ||||||||||||| | ||||| |||||||
Sbjct: 37 agggcctatttggcacagctccacctccacctccacc 1
Score = 38.2 bits (19), Expect = 0.001
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 6 taagggcctgtttggcacagctctagctcca 36
|||||| ||| |||||||||||| |||||||
Sbjct: 72 taagggtctgcttggcacagctccagctcca 102
>50534_osa-miRf11319-akr:pmrd
Length = 79
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 15 gtttggcacagctctagctcc 35
|||||||||||||||||||||
Sbjct: 68 gtttggcacagctctagctcc 48
>50091_osa-miRf10876-akr:pmrd
Length = 74
Score = 42.1 bits (21), Expect = 6e-05
Identities = 42/49 (85%)
Strand = Plus / Minus
Query: 30 agctccaactccacccctcctggagctggagctcagccaaacagtttca 78
||||||||||| ||| ||| | ||||| |||| |||||||||||||||
Sbjct: 53 agctccaactctacctctcttagagctagagcctagccaaacagtttca 5
>51216_osa-miRf12001-akr:pmrd
Length = 65
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 53 agctggagctcagccaaaca 72
||||||||||||||||||||
Sbjct: 28 agctggagctcagccaaaca 9
>50572_osa-miRf11357-akr:pmrd
Length = 96
Score = 38.2 bits (19), Expect = 0.001
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 6 taagggcctgtttggcacagctctagctcca 36
|||||| ||| |||||||||||| |||||||
Sbjct: 65 taagggtctgcttggcacagctccagctcca 95
>50571_osa-miRf11356-akr:pmrd
Length = 96
Score = 38.2 bits (19), Expect = 0.001
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 6 taagggcctgtttggcacagctctagctcca 36
|||||| ||| |||||||||||| |||||||
Sbjct: 65 taagggtctgcttggcacagctccagctcca 95
