miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00653;mir-22;AAGU02129422.1/1672-1588 9785:Loxodonta africana
(African savanna elephant)
Length = 85
Score = 161 bits (81), Expect = 3e-39
Identities = 84/85 (98%)
Strand = Plus / Plus
Query: 18 ggctgagccgcagtagttcttcactggcaagctttatgtcctgacccagctaaagctgcc 77
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggctgagccgcagtagttcttcagtggcaagctttatgtcctgacccagctaaagctgcc 60
Query: 78 agttgaagaactgttgccctctgcc 102
|||||||||||||||||||||||||
Sbjct: 61 agttgaagaactgttgccctctgcc 85
>RF00653;mir-22;AAFR03054554.1/22241-22157 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 85
Score = 89.7 bits (45), Expect = 8e-18
Identities = 63/69 (91%)
Strand = Plus / Plus
Query: 22 gagccgcagtagttcttcactggcaagctttatgtcctgacccagctaaagctgccagtt 81
||||| ||| ||||||||| |||| ||||||||||| || ||||||||||||||||||||
Sbjct: 5 gagccacagcagttcttcagtggcgagctttatgtcttgtcccagctaaagctgccagtt 64
Query: 82 gaagaactg 90
|||||||||
Sbjct: 65 gaagaactg 73
>RF00653;mir-22;BAAF04035139.1/3478-3391 8090:Oryzias latipes
(Japanese medaka)
Length = 88
Score = 73.8 bits (37), Expect = 5e-13
Identities = 69/79 (87%), Gaps = 3/79 (3%)
Strand = Plus / Plus
Query: 18 ggctgagccgcagtagttcttcactggcaagctttatg---tcctgacccagctaaagct 74
|||||| || ||| |||||||||||||||||||||||| || || ||||||||||||
Sbjct: 1 ggctgacccacagcagttcttcactggcaagctttatgttctcgtgcaccagctaaagct 60
Query: 75 gccagttgaagaactgttg 93
||||| |||||||||||||
Sbjct: 61 gccagctgaagaactgttg 79
>RF00653;mir-22;CR353219.1/89-176 9031:Gallus gallus (chicken)
Length = 88
Score = 63.9 bits (32), Expect = 4e-10
Identities = 61/70 (87%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 27 gcagtagttcttcactggcaagctttatgtcctgacccag---ctaaagctgccagttga 83
|||| ||||||||| |||||||||||||||||| | || |||||||||||||||||
Sbjct: 10 gcagcagttcttcagtggcaagctttatgtccttctctagtagctaaagctgccagttga 69
Query: 84 agaactgttg 93
||||||||||
Sbjct: 70 agaactgttg 79
>RF00653;mir-22;CAAE01014999.1/1459406-1459318 99883:Tetraodon
nigroviridis
Length = 89
Score = 63.9 bits (32), Expect = 4e-10
Identities = 62/70 (88%), Gaps = 4/70 (5%)
Strand = Plus / Plus
Query: 28 cagtagttcttcactggcaagctttatgtcct--gaccc--agctaaagctgccagttga 83
|||| ||||||||||||| ||||||||||||| ||||| ||||||||||||||||||
Sbjct: 11 cagtcgttcttcactggctagctttatgtcctccgaccccacgctaaagctgccagttga 70
Query: 84 agaactgttg 93
||| ||||||
Sbjct: 71 agagctgttg 80
>RF00653;mir-22;BAAF04020956.1/20-107 8090:Oryzias latipes
(Japanese medaka)
Length = 88
Score = 52.0 bits (26), Expect = 2e-06
Identities = 60/69 (86%), Gaps = 3/69 (4%)
Strand = Plus / Plus
Query: 28 cagtagttcttcactggcaagctttatgtcc--tgacccagc-taaagctgccagttgaa 84
|||| ||||||||||||| |||||||||||| | |||| | |||||||||||||||||
Sbjct: 11 cagtcgttcttcactggctagctttatgtcccacgccccaccgtaaagctgccagttgaa 70
Query: 85 gaactgttg 93
|| ||||||
Sbjct: 71 gagctgttg 79
>RF00653;mir-22;CU442763.9/20980-21067 7955:Danio rerio
(zebrafish)
Length = 88
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 66 gctaaagctgccagttgaagaactgttg 93
|||||||||||||| |||||||||||||
Sbjct: 52 gctaaagctgccagctgaagaactgttg 79
>RF00653;mir-22;BAAF04066287.1/5156-5069 8090:Oryzias latipes
(Japanese medaka)
Length = 88
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 33 gttcttcactggcaagctttatgt 56
||||||||||||||||||||||||
Sbjct: 16 gttcttcactggcaagctttatgt 39
>RF00653;mir-22;AAWZ01029001.1/2472-2561 28377:Anolis carolinensis
(green anole)
Length = 90
Score = 44.1 bits (22), Expect = 4e-04
Identities = 29/30 (96%), Gaps = 1/30 (3%)
Strand = Plus / Plus
Query: 65 agctaaagctgc-cagttgaagaactgttg 93
|||||||||||| |||||||||||||||||
Sbjct: 52 agctaaagctgcgcagttgaagaactgttg 81
>RF00653;mir-22;CT030218.5/50207-50290 7955:Danio rerio
(zebrafish)
Length = 84
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 68 taaagctgccagttgaagaactgttg 93
||||||||||||||||||| ||||||
Sbjct: 50 taaagctgccagttgaagagctgttg 75
