miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00825;mir-344;AAHY01062164.1/19497-19401 10090:Mus musculus
(house mouse)
Length = 97
Score = 105 bits (53), Expect = 6e-23
Identities = 59/61 (96%)
Strand = Plus / Plus
Query: 2 agtcagggtcctggcaggagtcctgctctcaactggttccaggctctagccaggggcttg 61
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 21 agtcaggctcctggcaggagtcctgctctcagctggttccaggctctagccaggggcttg 80
Query: 62 a 62
|
Sbjct: 81 a 81
>RF00825;mir-344;CAAA01110658.1/31741-31836 10090:Mus musculus
(house mouse)
Length = 96
Score = 69.9 bits (35), Expect = 3e-12
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 2 agtcagggtcctggcaggagtcctgctctcaactggttccaggctctagccaggg 56
||||||| ||||||| ||||||| ||||||| |||| ||||||||||||||||||
Sbjct: 21 agtcaggctcctggctggagtccagctctcagctgggtccaggctctagccaggg 75
>RF00825;mir-344;AABR04015933.1/11010-10914 10116:Rattus
norvegicus (Norway rat)
Length = 97
Score = 61.9 bits (31), Expect = 8e-10
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 2 agtcagggtcctggcaggagtcctgctctcaactggttccaggctctagccaggg 56
||||||| ||||||| ||||||| ||||| | |||| ||||||||||||||||||
Sbjct: 22 agtcaggctcctggctggagtccagctctaagctggatccaggctctagccaggg 76
>RF00825;mir-344;AABR04006115.1/24439-24344 10116:Rattus
norvegicus (Norway rat)
Length = 96
Score = 61.9 bits (31), Expect = 8e-10
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 2 agtcagggtcctggcaggagtcctgctctcaactggttccaggctctagccaggg 56
||||||| ||||||| ||||||| ||||| | |||| ||||||||||||||||||
Sbjct: 21 agtcaggctcctggctggagtccagctctaagctggatccaggctctagccaggg 75
>RF00825;mir-344;AC117644.6/172227-172322 10090:Mus musculus
(house mouse)
Length = 96
Score = 60.0 bits (30), Expect = 3e-09
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 10 tcctggcaggagtcctgctctcaactggttccaggctctagccagg 55
||||||| ||||||| ||||| | ||||||||||||||||||||||
Sbjct: 29 tcctggctggagtccagctctaagctggttccaggctctagccagg 74
>RF00825;mir-344;CAAA01010483.1/3830-3925 10090:Mus musculus
(house mouse)
Length = 96
Score = 52.0 bits (26), Expect = 8e-07
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 2 agtcagggtcctggcaggagtcctgctctcaactggttccaggctctagc 51
||||||| | ||||| ||||||| |||||||||||| ||||| |||||||
Sbjct: 21 agtcaggcttctggctggagtccagctctcaactggatccagtctctagc 70
>RF00825;mir-344;AC091333.6/101672-101766 10090:Mus musculus
(house mouse)
Length = 95
Score = 46.1 bits (23), Expect = 5e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 27 ctctcaactggttccaggctctagcca 53
|||||| ||||||||||||||||||||
Sbjct: 45 ctctcacctggttccaggctctagcca 71
