miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51060_osa-miRf11845-akr:pmrd
Length = 72
Score = 119 bits (60), Expect = 3e-28
Identities = 66/68 (97%)
Strand = Plus / Plus
Query: 1 gctcggtctggctcgttaggataacgagctagctcggctcggcttgttatcctaacgagc 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 gctcggtctggctcgttaggataacgagctagctcggctcggctcgttatcctaacgagc 60
Query: 61 taaaaacc 68
|| |||||
Sbjct: 61 tagaaacc 68
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 11 gctcgttaggataacgagc 29
|||||||||||||||||||
Sbjct: 60 gctcgttaggataacgagc 42
>51223_osa-miRf12008-akr:pmrd
Length = 74
Score = 111 bits (56), Expect = 7e-26
Identities = 65/68 (95%)
Strand = Plus / Plus
Query: 1 gctcggtctggctcgttaggataacgagctagctcggctcggcttgttatcctaacgagc 60
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 2 gctcggtctggctcgctaggataacgagctagctcggctcggctcgttatcctaacgagc 61
Query: 61 taaaaacc 68
|| |||||
Sbjct: 62 tagaaacc 69
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 11 gctcgttaggataacgagc 29
|||||||||||||||||||
Sbjct: 61 gctcgttaggataacgagc 43
>50981_osa-miRf11766-akr:pmrd
Length = 69
Score = 111 bits (56), Expect = 7e-26
Identities = 62/64 (96%)
Strand = Plus / Minus
Query: 5 ggtctggctcgttaggataacgagctagctcggctcggcttgttatcctaacgagctaaa 64
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 64 ggtctggctcgttaggataacgagctagctcggctcggctcgttatcctaacgagctaga 5
Query: 65 aacc 68
||||
Sbjct: 4 aacc 1
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 11 gctcgttaggataacgagc 29
|||||||||||||||||||
Sbjct: 9 gctcgttaggataacgagc 27
>50684_osa-miRf11469-akr:pmrd
Length = 72
Score = 103 bits (52), Expect = 2e-23
Identities = 67/72 (93%)
Strand = Plus / Minus
Query: 1 gctcggtctggctcgttaggataacgagctagctcggctcggcttgttatcctaacgagc 60
|||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct: 72 gctcggtcaagctcgttaggataacgagctagctcggctcggctcgttatcgtaacgagc 13
Query: 61 taaaaacccagc 72
|| |||||||||
Sbjct: 12 tagaaacccagc 1
>50957_osa-miRf11742-akr:pmrd
Length = 111
Score = 83.8 bits (42), Expect = 1e-17
Identities = 57/62 (91%)
Strand = Plus / Plus
Query: 11 gctcgttaggataacgagctagctcggctcggcttgttatcctaacgagctaaaaaccca 70
||||||||||||||| |||||||||||||||||| ||||| |||||||||| |||||||
Sbjct: 1 gctcgttaggataacaagctagctcggctcggctcattatcgtaacgagctagaaaccca 60
Query: 71 gc 72
||
Sbjct: 61 gc 62
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 42 gcttgttatcctaacgagc 60
|||||||||||||||||||
Sbjct: 19 gcttgttatcctaacgagc 1
>50473_osa-miRf11258-akr:pmrd
Length = 72
Score = 77.8 bits (39), Expect = 9e-16
Identities = 51/55 (92%)
Strand = Plus / Minus
Query: 10 ggctcgttaggataacgagctagctcggctcggcttgttatcctaacgagctaaa 64
||||||||||||||| ||||| |||| |||||||| |||||||||||||||||||
Sbjct: 63 ggctcgttaggataatgagctggctcagctcggctcgttatcctaacgagctaaa 9
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 11 gctcgttaggataacgagc 29
|||||||||||||||||||
Sbjct: 13 gctcgttaggataacgagc 31
>50004_osa-miRf10789-akr:pmrd
Length = 69
Score = 65.9 bits (33), Expect = 3e-12
Identities = 60/69 (86%), Gaps = 5/69 (7%)
Strand = Plus / Plus
Query: 5 ggtctggctcgttaggataacgagctagctc-----ggctcggcttgttatcctaacgag 59
||||||||||||||| |||| |||||||||| ||||||||| ||||||||| ||||
Sbjct: 1 ggtctggctcgttagaataatgagctagctcggctcggctcggctcgttatcctagcgag 60
Query: 60 ctaaaaacc 68
|||||||||
Sbjct: 61 ctaaaaacc 69
>49717_osa-miRf10502-akr:pmrd
Length = 77
Score = 65.9 bits (33), Expect = 3e-12
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 32 gctcggctcggcttgttatcctaacgagctaaaaacccagc 72
||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 37 gctcggctcggctcgttatcctaacgagctagaaacccagc 77
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 11 gctcgttaggataacgagc 29
|||||||||||||||||||
Sbjct: 65 gctcgttaggataacgagc 47
>49469_osa-miRf10254-akr:pmrd
Length = 73
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 40 cggcttgttatcctaacgagctaaaaacc 68
||||| |||||||||||||||||||||||
Sbjct: 29 cggctcgttatcctaacgagctaaaaacc 1
Score = 46.1 bits (23), Expect = 3e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 11 gctcgttaggataacgagctagctcggctcg 41
|||||||||||||||||| | ||||||||||
Sbjct: 67 gctcgttaggataacgagttggctcggctcg 37
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 11 gctcgttaggataacgagc 29
|||||||||||||||||||
Sbjct: 9 gctcgttaggataacgagc 27
>49771_osa-miRf10556-akr:pmrd
Length = 67
Score = 46.1 bits (23), Expect = 3e-06
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 22 taacgagctagctcggctcggcttgttatcctaacgagc 60
||||||||| ||||||||||||| |||||| |||||||
Sbjct: 19 taacgagctggctcggctcggctcgttatctaaacgagc 57
>50701_osa-miRf11486-akr:pmrd
Length = 88
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 36 ggctcggcttgttatcctaacgagct 61
||||||||| ||||||||||||||||
Sbjct: 1 ggctcggctcgttatcctaacgagct 26
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 11 gctcgttaggataacgagc 29
|||||||||||||||||||
Sbjct: 25 gctcgttaggataacgagc 7
