miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>50820_osa-miRf11605-akr:pmrd
Length = 101
Score = 200 bits (101), Expect = 1e-52
Identities = 101/101 (100%)
Strand = Plus / Minus
Query: 1 gttatctactccctccgtcccaaaataagtcaatcccgtactagtatatgacacttccta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 gttatctactccctccgtcccaaaataagtcaatcccgtactagtatatgacacttccta 42
Query: 61 gtacgaggttggtttattttgggacggagagagtagatgac 101
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 41 gtacgaggttggtttattttgggacggagagagtagatgac 1
Score = 54.0 bits (27), Expect = 2e-08
Identities = 78/95 (82%)
Strand = Plus / Plus
Query: 4 atctactccctccgtcccaaaataagtcaatcccgtactagtatatgacacttcctagta 63
|||||||| |||||||||||||||| ||| | |||||||| | || || | ||||||
Sbjct: 4 atctactctctccgtcccaaaataaaccaacctcgtactaggaagtgtcatatactagta 63
Query: 64 cgaggttggtttattttgggacggagagagtagat 98
|| | ||| |||||||||||||||| ||||||||
Sbjct: 64 cgggattgacttattttgggacggagggagtagat 98
>50819_osa-miRf11604-akr:pmrd
Length = 101
Score = 200 bits (101), Expect = 1e-52
Identities = 101/101 (100%)
Strand = Plus / Minus
Query: 1 gttatctactccctccgtcccaaaataagtcaatcccgtactagtatatgacacttccta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 gttatctactccctccgtcccaaaataagtcaatcccgtactagtatatgacacttccta 42
Query: 61 gtacgaggttggtttattttgggacggagagagtagatgac 101
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 41 gtacgaggttggtttattttgggacggagagagtagatgac 1
Score = 54.0 bits (27), Expect = 2e-08
Identities = 78/95 (82%)
Strand = Plus / Plus
Query: 4 atctactccctccgtcccaaaataagtcaatcccgtactagtatatgacacttcctagta 63
|||||||| |||||||||||||||| ||| | |||||||| | || || | ||||||
Sbjct: 4 atctactctctccgtcccaaaataaaccaacctcgtactaggaagtgtcatatactagta 63
Query: 64 cgaggttggtttattttgggacggagagagtagat 98
|| | ||| |||||||||||||||| ||||||||
Sbjct: 64 cgggattgacttattttgggacggagggagtagat 98
>49154_osa-miR1862c:pmrd
Length = 89
Score = 176 bits (89), Expect = 2e-45
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 8 actccctccgtcccaaaataagtcaatcccgtactagtatatgacacttcctagtacgag 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 actccctccgtcccaaaataagtcaatcccgtactagtatatgacacttcctagtacgag 60
Query: 68 gttggtttattttgggacggagagagtag 96
|||||||||||||||||||||||||||||
Sbjct: 61 gttggtttattttgggacggagagagtag 89
Score = 42.1 bits (21), Expect = 8e-05
Identities = 72/89 (80%)
Strand = Plus / Minus
Query: 6 ctactccctccgtcccaaaataagtcaatcccgtactagtatatgacacttcctagtacg 65
|||||| |||||||||||||||| ||| | |||||||| | || || | ||||||||
Sbjct: 89 ctactctctccgtcccaaaataaaccaacctcgtactaggaagtgtcatatactagtacg 30
Query: 66 aggttggtttattttgggacggagagagt 94
| ||| |||||||||||||||| ||||
Sbjct: 29 ggattgacttattttgggacggagggagt 1
>49152_osa-miR1862a:pmrd
Length = 88
Score = 71.9 bits (36), Expect = 8e-14
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 56 tcctagtacgaggttggtttattttgggacggagagagta 95
|||||||||||||||||||||||||||||||||| |||||
Sbjct: 48 tcctagtacgaggttggtttattttgggacggagggagta 87
Score = 54.0 bits (27), Expect = 2e-08
Identities = 74/89 (83%), Gaps = 3/89 (3%)
Strand = Plus / Minus
Query: 7 tactccctccgtcccaaaataagtcaatcccgtactagtatatgacacttcctagtacga 66
|||||||||||||||||||||| ||| | |||||||| || ||||| ||| |||||
Sbjct: 87 tactccctccgtcccaaaataaaccaacctcgtactaggatgtgacatgtcc---tacga 31
Query: 67 ggttggtttattttgggacggagagagta 95
|||| | |||||| ||||||||| |||||
Sbjct: 30 ggtttggttatttcgggacggagggagta 2
>50234_osa-miRf11019-akr:pmrd
Length = 99
Score = 58.0 bits (29), Expect = 1e-09
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 7 tactccctccgtcccaaaataagtcaatcccgtactagtatatgacacttcctagtacga 66
||||||||||||||||||| || |||| | ||||||| | |||||| ||||||||| |
Sbjct: 6 tactccctccgtcccaaaaaaactcaacctcgtactacgacgtgacacatcctagtacta 65
Query: 67 ggttggtttattttgggacggagagagta 95
||||| || ||||||||| ||| |||||
Sbjct: 66 ggttgcctttttttgggacagagggagta 94
Score = 58.0 bits (29), Expect = 1e-09
Identities = 74/89 (83%)
Strand = Plus / Minus
Query: 7 tactccctccgtcccaaaataagtcaatcccgtactagtatatgacacttcctagtacga 66
||||||||| ||||||||| ||| ||| | ||||||| || || ||| || ||||||||
Sbjct: 94 tactccctctgtcccaaaaaaaggcaacctagtactaggatgtgtcacgtcgtagtacga 35
Query: 67 ggttggtttattttgggacggagagagta 95
||||| || ||||||||||||| |||||
Sbjct: 34 ggttgagtttttttgggacggagggagta 6
>49153_osa-miR1862b:pmrd
Length = 199
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 61 gtacgaggttggtttattttgggacggag 89
|||||||||||||||||||||||||||||
Sbjct: 130 gtacgaggttggtttattttgggacggag 158
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 9 ctccctccgtcccaaaataa 28
||||||||||||||||||||
Sbjct: 162 ctccctccgtcccaaaataa 143
>48648_hpr-miR1120:pmrd
Length = 85
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 6 ctactccctccgtcccaaaataagt 30
|||||||||||||||||||||||||
Sbjct: 5 ctactccctccgtcccaaaataagt 29
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 7 tactccctccgtcccaaaataagt 30
||||||||||||||||||||||||
Sbjct: 80 tactccctccgtcccaaaataagt 57
>49596_osa-miRf10381-akr:pmrd
Length = 147
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 7 tactccctccgtcccaaaataagt 30
||||||||||||||||||||||||
Sbjct: 1 tactccctccgtcccaaaataagt 24
>49658_osa-miRf10443-akr:pmrd
Length = 108
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 5 tctactccctccgtcccaaaataagtc 31
||||||||||||||||||||| |||||
Sbjct: 12 tctactccctccgtcccaaaaaaagtc 38
>49155_osa-miR1862d:pmrd
Length = 150
Score = 46.1 bits (23), Expect = 5e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 61 gtacgaggttggtttattttgggacggagagagta 95
|||| ||||| |||||||||||||||||| |||||
Sbjct: 88 gtactaggtttgtttattttgggacggagggagta 122
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 7 tactccctccgtcccaaaataa 28
||||||||||||||||||||||
Sbjct: 122 tactccctccgtcccaaaataa 101
>50920_osa-miRf11705-akr:pmrd
Length = 134
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 6 ctactccctccgtcccaaaata 27
||||||||||||||||||||||
Sbjct: 123 ctactccctccgtcccaaaata 102
>50485_osa-miRf11270-akr:pmrd
Length = 82
Score = 44.1 bits (22), Expect = 2e-05
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 7 tactccctccgtcccaaaataagtcaatcccgtactag 44
||||||||||||||||||| ||| | ||||| ||||||
Sbjct: 76 tactccctccgtcccaaaaaaagcccatcccatactag 39
>49958_osa-miRf10743-akr:pmrd
Length = 122
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 6 ctactccctccgtcccaaaata 27
||||||||||||||||||||||
Sbjct: 111 ctactccctccgtcccaaaata 90
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 7 tactccctccgtcccaaaata 27
|||||||||||||||||||||
Sbjct: 12 tactccctccgtcccaaaata 32
>49957_osa-miRf10742-akr:pmrd
Length = 128
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 ctactccctccgtcccaaaata 27
||||||||||||||||||||||
Sbjct: 16 ctactccctccgtcccaaaata 37
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 7 tactccctccgtcccaaaata 27
|||||||||||||||||||||
Sbjct: 115 tactccctccgtcccaaaata 95
>49784_osa-miRf10569-akr:pmrd
Length = 132
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 tactccctccgtcccaaaataa 28
||||||||||||||||||||||
Sbjct: 11 tactccctccgtcccaaaataa 32
>49783_osa-miRf10568-akr:pmrd
Length = 132
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 tactccctccgtcccaaaataa 28
||||||||||||||||||||||
Sbjct: 11 tactccctccgtcccaaaataa 32
>49156_osa-miR1862e:pmrd
Length = 93
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 7 tactccctccgtcccaaaataa 28
||||||||||||||||||||||
Sbjct: 91 tactccctccgtcccaaaataa 70
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 72 gtttattttgggacggagagagta 95
|||||||||||||||||| |||||
Sbjct: 68 gtttattttgggacggagggagta 91
>49818_osa-miRf10603-akr:pmrd
Length = 97
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 75 tattttgggacggagagagta 95
|||||||||||||||||||||
Sbjct: 26 tattttgggacggagagagta 6
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 7 tactccctccgtcccaaaata 27
|||||||||||||||||||||
Sbjct: 92 tactccctccgtcccaaaata 72
>49537_osa-miRf10322-akr:pmrd
Length = 105
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 7 tactccctccgtcccaaaata 27
|||||||||||||||||||||
Sbjct: 10 tactccctccgtcccaaaata 30
>49536_osa-miRf10321-akr:pmrd
Length = 105
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 7 tactccctccgtcccaaaata 27
|||||||||||||||||||||
Sbjct: 10 tactccctccgtcccaaaata 30
>49517_osa-miRf10302-akr:pmrd
Length = 103
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 7 tactccctccgtcccaaaata 27
|||||||||||||||||||||
Sbjct: 7 tactccctccgtcccaaaata 27
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 7 tactccctccgtcccaaaata 27
|||||||||||||||||||||
Sbjct: 97 tactccctccgtcccaaaata 77
Score = 40.1 bits (20), Expect = 3e-04
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 60 agtacgaggttggtttattttgggacggagagagta 95
||||| |||||| | ||||||||||||||| |||||
Sbjct: 42 agtacaaggttgctatattttgggacggagggagta 7
>49366_osa-miRf10151-akr:pmrd
Length = 82
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 7 tactccctccgtcccaaaata 27
|||||||||||||||||||||
Sbjct: 79 tactccctccgtcccaaaata 59
>49314_osa-miRf10099-akr:pmrd
Length = 144
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 7 tactccctccgtcccaaaata 27
|||||||||||||||||||||
Sbjct: 14 tactccctccgtcccaaaata 34
>54757_tmo-miR1122:pmrd
Length = 180
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 7 tactccctccgtcccaaaat 26
||||||||||||||||||||
Sbjct: 26 tactccctccgtcccaaaat 45
>54697_tae-miR1122:pmrd
Length = 295
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 7 tactccctccgtcccaaaat 26
||||||||||||||||||||
Sbjct: 151 tactccctccgtcccaaaat 132
>50587_osa-miRf11372-akr:pmrd
Length = 126
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 4 atctactccctccgtcccaaaata 27
||||||||||||||||||| ||||
Sbjct: 124 atctactccctccgtcccataata 101
>50434_osa-miRf11219-akr:pmrd
Length = 123
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 ttttgggacggagagagtag 96
||||||||||||||||||||
Sbjct: 99 ttttgggacggagagagtag 118
>50433_osa-miRf11218-akr:pmrd
Length = 123
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 77 ttttgggacggagagagtag 96
||||||||||||||||||||
Sbjct: 25 ttttgggacggagagagtag 6
>49444_osa-miRf10229-akr:pmrd
Length = 72
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 7 tactccctccgtcccaaaataagt 30
||||| ||||||||||||||||||
Sbjct: 72 tactcactccgtcccaaaataagt 49
>49370_osa-miRf10155-akr:pmrd
Length = 69
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 6 ctactccctccgtcccaaaa 25
||||||||||||||||||||
Sbjct: 67 ctactccctccgtcccaaaa 48
>49057_osa-miR812j:pmrd
Length = 297
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 72 gtttattttgggacggagagagta 95
|||||||||| |||||||||||||
Sbjct: 241 gtttattttgtgacggagagagta 264
>48647_hpi-miR1122:pmrd
Length = 180
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 7 tactccctccgtcccaaaat 26
||||||||||||||||||||
Sbjct: 28 tactccctccgtcccaaaat 47
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 7 tactccctccgtcccaaaat 26
||||||||||||||||||||
Sbjct: 154 tactccctccgtcccaaaat 135
