miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>50551_osa-miRf11336-akr:pmrd
Length = 212
Score = 131 bits (66), Expect = 1e-31
Identities = 81/86 (94%)
Strand = Plus / Minus
Query: 5 tatcatctgatacctcgcaagtatcacctgatacgtggtaggaattgcttgatacttgat 64
||||||||||||||| |||||||| |||||||||||||||||||| || |||||||||||
Sbjct: 122 tatcatctgataccttgcaagtattacctgatacgtggtaggaatcgcctgatacttgat 63
Query: 65 ggttatacctgatacatgttaggtat 90
|||||||| |||||||||||||||||
Sbjct: 62 ggttatacttgatacatgttaggtat 37
>50532_osa-miRf11317-akr:pmrd
Length = 131
Score = 105 bits (53), Expect = 8e-24
Identities = 62/65 (95%)
Strand = Plus / Minus
Query: 23 aagtatcacctgatacgtggtaggaattgcttgatacttgatggttatacctgatacatg 82
||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||
Sbjct: 131 aagtatcacctgatacgtggtaggaatcgcctgatacttgatggttatacctgatgcatg 72
Query: 83 ttagg 87
|||||
Sbjct: 71 ttagg 67
>50550_osa-miRf11335-akr:pmrd
Length = 160
Score = 97.6 bits (49), Expect = 2e-21
Identities = 58/61 (95%)
Strand = Plus / Minus
Query: 30 acctgatacgtggtaggaattgcttgatacttgatggttatacctgatacatgttaggta 89
|||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||
Sbjct: 160 acctgatacgtggtaggaatcgcctgatacttgatggttatacttgatacatgttaggta 101
Query: 90 t 90
|
Sbjct: 100 t 100
Score = 69.9 bits (35), Expect = 4e-13
Identities = 38/39 (97%)
Strand = Plus / Minus
Query: 86 ggtataaggcgatacttgcgaggtatcaggtgatacctg 124
||||| |||||||||||||||||||||||||||||||||
Sbjct: 80 ggtatcaggcgatacttgcgaggtatcaggtgatacctg 42
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 5 tatcatctgatacctcgcaagtatcacctgatac 38
||||| ||||||||||||||||||| ||||||||
Sbjct: 46 tatcacctgatacctcgcaagtatcgcctgatac 79
>49806_osa-miRf10591-akr:pmrd
Length = 130
Score = 85.7 bits (43), Expect = 7e-18
Identities = 55/59 (93%)
Strand = Plus / Minus
Query: 27 atcacctgatacgtggtaggaattgcttgatacttgatggttatacctgatacatgtta 85
||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||
Sbjct: 126 atcacctgatacgtggtaggaatcacctgatacttgatggttatacctgatgcatgtta 68
>50716_osa-miRf11501-akr:pmrd
Length = 145
Score = 73.8 bits (37), Expect = 3e-14
Identities = 40/41 (97%)
Strand = Plus / Minus
Query: 5 tatcatctgatacctcgcaagtatcacctgatacgtggtag 45
||||||||||||||| |||||||||||||||||||||||||
Sbjct: 78 tatcatctgataccttgcaagtatcacctgatacgtggtag 38
>49943_osa-miRf10728-akr:pmrd
Length = 141
Score = 73.8 bits (37), Expect = 3e-14
Identities = 40/41 (97%)
Strand = Plus / Minus
Query: 5 tatcatctgatacctcgcaagtatcacctgatacgtggtag 45
|||||||||||||||| ||||||||||||||||||||||||
Sbjct: 76 tatcatctgatacctcacaagtatcacctgatacgtggtag 36
Score = 52.0 bits (26), Expect = 1e-07
Identities = 47/54 (87%)
Strand = Plus / Minus
Query: 5 tatcatctgatacctcgcaagtatcacctgatacgtggtaggaattgcttgata 58
|||| ||||||||||||||||||||||| ||||||||| |||| || |||||
Sbjct: 139 tatcgtctgatacctcgcaagtatcaccctctacgtggtaagaatcgcatgata 86
>49831_osa-miRf10616-akr:pmrd
Length = 93
Score = 73.8 bits (37), Expect = 3e-14
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 5 tatcatctgatacctcgcaagtatcacctgatacgtggtag 45
|||||||||||||||| ||||||||||||||||||||||||
Sbjct: 21 tatcatctgatacctcacaagtatcacctgatacgtggtag 61
>50124_osa-miRf10909-akr:pmrd
Length = 149
Score = 65.9 bits (33), Expect = 7e-12
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 1 tagatatcatctgatacctcgcaagtatcacctgatacgtggtag 45
||||||||||||||||||| ||||||||||| ||||| |||||||
Sbjct: 84 tagatatcatctgataccttgcaagtatcacatgatatgtggtag 40
>50125_osa-miRf10910-akr:pmrd
Length = 190
Score = 61.9 bits (31), Expect = 1e-10
Identities = 75/87 (86%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 5 tatcatctgatacctcgcaagtatcacctgatacgtggtaggaattgcttgatacttgat 64
|||||| ||||||||| |||||||||||||||| ||||| |||| ||||||||| ||||
Sbjct: 80 tatcatatgatacctcacaagtatcacctgatatatggta-gaatcgcttgatacctgat 138
Query: 65 ggttat-acctgatacatgttaggtat 90
| ||| ||||||||| |||||||||
Sbjct: 139 aggtatcacctgataccggttaggtat 165
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 ctgatacctcgcaagtatcacc 32
||||||||||||||||||||||
Sbjct: 23 ctgatacctcgcaagtatcacc 44
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 96 gatacttgcgaggtatcaggt 116
|||||||||||||||||||||
Sbjct: 41 gatacttgcgaggtatcaggt 21
>49812_osa-miRf10597-akr:pmrd
Length = 94
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 5 tatcatctgatacctcgcaagtatcacct 33
|||||||||||||||||||||||||||||
Sbjct: 21 tatcatctgatacctcgcaagtatcacct 49
Score = 50.1 bits (25), Expect = 4e-07
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 91 aaggcgatacttgcgaggtatcaggtgatacct 123
|||| ||||||||||||||||||| ||||||||
Sbjct: 50 aaggtgatacttgcgaggtatcagatgatacct 18
>49374_osa-miRf10159-akr:pmrd
Length = 98
Score = 58.0 bits (29), Expect = 2e-09
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 5 tatcatctgatacctcgcaagtatcacctgatacgtggtag 45
||||||| ||||||||||||||||||| |||||| ||||||
Sbjct: 23 tatcatccgatacctcgcaagtatcacgtgatacatggtag 63
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 96 gatacttgcgaggtatcaggtgatacct 123
||||||||||||||||| | ||||||||
Sbjct: 47 gatacttgcgaggtatcggatgatacct 20
>49315_osa-miRf10100-akr:pmrd
Length = 169
Score = 58.0 bits (29), Expect = 2e-09
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 5 tatcatctgatacctcgcaagtatcacctgatacgtggtag 45
|||||||||||||||| |||||||||||| | |||||||||
Sbjct: 80 tatcatctgatacctcacaagtatcacctaacacgtggtag 120
>49982_osa-miRf10767-akr:pmrd
Length = 190
Score = 56.0 bits (28), Expect = 6e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 5 tatcatctgatacctcgcaagtatcacctgatacgtggta 44
|||||| || ||||||||||||||||||||| ||||||||
Sbjct: 80 tatcatatggtacctcgcaagtatcacctgacacgtggta 119
Score = 44.1 bits (22), Expect = 2e-05
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 11 ctgatacctcgcaagtatcacctgatacgtggtaggaattgcttgatacttgat 64
||||||||||||| |||| |||| ||||||||| |||| || |||||| ||||
Sbjct: 23 ctgatacctcgcaggtattaccttctacgtggtaagaatcgcatgatacctgat 76
>49708_osa-miRf10493-akr:pmrd
Length = 84
Score = 52.0 bits (26), Expect = 1e-07
Identities = 47/54 (87%)
Strand = Plus / Minus
Query: 11 ctgatacctcgcaagtatcacctgatacgtggtaggaattgcttgatacttgat 64
||||||||||||||||||||| ||||||||| |||| || |||||||||||
Sbjct: 72 ctgatacctcgcaagtatcacgctctacgtggtaagaatcgcatgatacttgat 19
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 96 gatacttgcgaggtatcaggt 116
|||||||||||||||||||||
Sbjct: 54 gatacttgcgaggtatcaggt 74
>49807_osa-miRf10592-akr:pmrd
Length = 82
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 5 tatcatctgatacctcgcaagtatcacc 32
|||||| |||||||||||||||||||||
Sbjct: 79 tatcatatgatacctcgcaagtatcacc 52
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 96 gatacttgcgaggtatcaggtgatacct 123
|||||||||||||||||| ||||||||
Sbjct: 55 gatacttgcgaggtatcatatgatacct 82
>49707_osa-miRf10492-akr:pmrd
Length = 82
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 5 tatcatctgatacctcgcaagtatcacc 32
|||||| |||||||||||||||||||||
Sbjct: 79 tatcatatgatacctcgcaagtatcacc 52
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 96 gatacttgcgaggtatcaggtgatacct 123
|||||||||||||||||| ||||||||
Sbjct: 55 gatacttgcgaggtatcatatgatacct 82
>50548_osa-miRf11333-akr:pmrd
Length = 97
Score = 42.1 bits (21), Expect = 1e-04
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 12 tgatacctcgcaagtatcacctgatacgtggta 44
||||||||||| |||||||| | ||||||||||
Sbjct: 89 tgatacctcgcgagtatcacgtaatacgtggta 57
>49364_osa-miRf10149-akr:pmrd
Length = 157
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 96 gatacttgcgaggtatcaggtgatacct 123
|||||| ||||||||||| |||||||||
Sbjct: 108 gatactcgcgaggtatcatgtgatacct 81
Score = 40.1 bits (20), Expect = 4e-04
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 12 tgatacctcgcaagtatcacctgatacgtggtaggaattg 51
||||||||||| ||||||| |||||||||||| |||||
Sbjct: 91 tgatacctcgcgagtatcaagcgatacgtggtagaaattg 130
>49360_osa-miRf10145-akr:pmrd
Length = 98
Score = 40.1 bits (20), Expect = 4e-04
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 12 tgatacctcgcaagtatcacctgatacgtggt 43
|||||||||| |||||||| |||||||||||
Sbjct: 90 tgatacctcgtgagtatcacgtgatacgtggt 59
