miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>50634_osa-miRf11419-akr:pmrd
Length = 151
Score = 60.0 bits (30), Expect = 3e-10
Identities = 49/56 (87%), Gaps = 1/56 (1%)
Strand = Plus / Plus
Query: 39 cttcttttccggaagccgatctccnnnnnnnctccagggttaagcgtgcttggcct 94
|||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 92 cttcttttccggaagccgatctccaaagaa-ctccagggttaagcgtgcttggcct 146
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 70 ctccagggttaagcgtgcttggcct 94
|||||||||||||||||||||||||
Sbjct: 2 ctccagggttaagcgtgcttggcct 26
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 aactctagggttaagcgtgcttggcct 27
||||| |||||||||||||||||||||
Sbjct: 120 aactccagggttaagcgtgcttggcct 146
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 2 actctagggttaagcgtgcttggcct 27
|||| |||||||||||||||||||||
Sbjct: 1 actccagggttaagcgtgcttggcct 26
>49495_osa-miRf10280-akr:pmrd
Length = 90
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 70 ctccagggttaagcgtgcttggcctggag 98
|||| ||||||||||||||||||||||||
Sbjct: 1 ctcctgggttaagcgtgcttggcctggag 29
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 gggttaagcgtgcttggcctggag 31
||||||||||||||||||||||||
Sbjct: 6 gggttaagcgtgcttggcctggag 29
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 gggttaagcgtgcttggcctggag 31
||||||||||||||||||||||||
Sbjct: 67 gggttaagcgtgcttggcctggag 90
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 75 gggttaagcgtgcttggcctggag 98
||||||||||||||||||||||||
Sbjct: 67 gggttaagcgtgcttggcctggag 90
>49972_osa-miRf10757-akr:pmrd
Length = 87
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 ggttaagcgtgcttggcctggag 31
|||||||||||||||||||||||
Sbjct: 36 ggttaagcgtgcttggcctggag 58
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 ggttaagcgtgcttggcctggag 98
|||||||||||||||||||||||
Sbjct: 36 ggttaagcgtgcttggcctggag 58
