miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>49748_osa-miRf10533-akr:pmrd
Length = 121
Score = 115 bits (58), Expect = 5e-27
Identities = 74/78 (94%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 1 cggtcagaccggccatgcagagccggtcagaccgctggctaccaccagtcagaccggccg 60
||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||
Sbjct: 45 cggtcagaccggccatgcagagccggttagaccgcggg-taccaccagtcagaccggccg 103
Query: 61 tgcaatgccggttagacc 78
|||||||||||| |||||
Sbjct: 104 tgcaatgccggtcagacc 121
Score = 40.1 bits (20), Expect = 2e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 48 gtcagaccggccgtgcaatgccggttagaccg 79
|||||||||||| |||| |||||||||||||
Sbjct: 47 gtcagaccggccatgcagagccggttagaccg 78
>50306_osa-miRf11091-akr:pmrd
Length = 111
Score = 91.7 bits (46), Expect = 7e-20
Identities = 65/70 (92%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 3 gtcagaccggccatgcagagccggtcagaccgctggctaccaccagtcagaccggccgtg 62
||||||||||||||||||||||||||||||||| || ||||||| |||||||||| | ||
Sbjct: 42 gtcagaccggccatgcagagccggtcagaccgc-gggtaccaccggtcagaccggtcatg 100
Query: 63 caatgccggt 72
||||||||||
Sbjct: 101 caatgccggt 110
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 7 gaccggccatgcagagccggtcagaccgc 35
||||||||||||| ||||||||||||||
Sbjct: 1 gaccggccatgcaatgccggtcagaccgc 29
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 52 gaccggccgtgcaatgccggttagaccg 79
|||||||| |||||||||||| ||||||
Sbjct: 1 gaccggccatgcaatgccggtcagaccg 28
>50807_osa-miRf11592-akr:pmrd
Length = 79
Score = 85.7 bits (43), Expect = 4e-18
Identities = 70/79 (88%)
Strand = Plus / Plus
Query: 1 cggtcagaccggccatgcagagccggtcagaccgctggctaccaccagtcagaccggccg 60
||||| ||||||||||||||||||||||||||||| || | |||| ||||||||||| |
Sbjct: 1 cggtcggaccggccatgcagagccggtcagaccgccggtcatcaccggtcagaccggctg 60
Query: 61 tgcaatgccggttagaccg 79
||||||||| || ||||||
Sbjct: 61 tgcaatgccagtcagaccg 79
>50857_osa-miRf11642-akr:pmrd
Length = 76
Score = 73.8 bits (37), Expect = 2e-14
Identities = 68/77 (88%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 2 ggtcagaccggccatgcagagccggtcagaccgctggctaccaccagtcagaccggccgt 61
|||||||||||||||||| | |||||||||||| || ||||||| |||||||||| |||
Sbjct: 1 ggtcagaccggccatgcaaatccggtcagaccgacgg-taccaccggtcagaccggtcgt 59
Query: 62 gcaatgccggttagacc 78
||| ||||||| |||||
Sbjct: 60 gcattgccggtcagacc 76
>50880_osa-miRf11665-akr:pmrd
Length = 79
Score = 60.0 bits (30), Expect = 2e-10
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 1 cggtcagaccggccatgcagagccggtcagaccg 34
||||||||||||||||||| ||||||||||||||
Sbjct: 34 cggtcagaccggccatgcaaagccggtcagaccg 1
Score = 40.1 bits (20), Expect = 2e-04
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 48 gtcagaccggccgtgcaatgccggttagaccg 79
|||||||||||| ||||| |||||| ||||||
Sbjct: 32 gtcagaccggccatgcaaagccggtcagaccg 1
>51089_osa-miRf11874-akr:pmrd
Length = 124
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 48 gtcagaccggccgtgcaatgccggt 72
||||||||||||| |||||||||||
Sbjct: 93 gtcagaccggccgcgcaatgccggt 117
Score = 40.1 bits (20), Expect = 2e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 48 gtcagaccggccgtgcaatgccggttagaccg 79
|||| ||||||||||||| |||||| ||||||
Sbjct: 3 gtcaaaccggccgtgcaaggccggtcagaccg 34
Score = 38.2 bits (19), Expect = 9e-04
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 1 cggtcagaccggccatgcagagccggtcagaccgc 35
|||||| ||||||| |||| ||||||||||||||
Sbjct: 1 cggtcaaaccggccgtgcaaggccggtcagaccgc 35
>50774_osa-miRf11559-akr:pmrd
Length = 79
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 51 agaccggccgtgcaatgccggttagaccg 79
||||| |||||||||||||||| ||||||
Sbjct: 51 agacctgccgtgcaatgccggtcagaccg 79
