miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>50942_osa-miRf11727-akr:pmrd
Length = 124
Score = 184 bits (93), Expect = 1e-47
Identities = 118/125 (94%), Gaps = 1/125 (0%)
Strand = Plus / Plus
Query: 2 ccgggcggttggatagattatccccgtgcggtcgcccggcccgcctgcagctcatcgtct 61
|||||||||||||||||||||||| ||||||| ||||||||| |||||||||| | ||||
Sbjct: 1 ccgggcggttggatagattatccc-gtgcggttgcccggcccacctgcagctcctagtct 59
Query: 62 gggaaaatctttattttcgcgtgcgggcgtgccgaccgcacgggataatcgattatcccg 121
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 60 gggaaaatctttattttcgcgtgcgggcggaccgaccgcacgggataatcgattatcccg 119
Query: 122 tgcgg 126
|||||
Sbjct: 120 tgcgg 124
Score = 60.0 bits (30), Expect = 4e-10
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 97 ccgcacgggataatcgattatcccgtgcgg 126
||||||||||||||||||||||||||||||
Sbjct: 124 ccgcacgggataatcgattatcccgtgcgg 95
>50658_osa-miRf11443-akr:pmrd
Length = 124
Score = 176 bits (89), Expect = 3e-45
Identities = 117/125 (93%), Gaps = 1/125 (0%)
Strand = Plus / Plus
Query: 2 ccgggcggttggatagattatccccgtgcggtcgcccggcccgcctgcagctcatcgtct 61
|||||||||||||||||||||||| |||||||||||||||||||||||||||| || |||
Sbjct: 1 ccgggcggttggatagattatccc-gtgcggtcgcccggcccgcctgcagctcctcatct 59
Query: 62 gggaaaatctttattttcgcgtgcgggcgtgccgaccgcacgggataatcgattatcccg 121
||||||||||||| |||| |||||||||| ||| | ||||||||||||||||||||||||
Sbjct: 60 gggaaaatctttactttcacgtgcgggcgggccaatcgcacgggataatcgattatcccg 119
Query: 122 tgcgg 126
|||||
Sbjct: 120 tgcgg 124
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 97 ccgcacgggataatcgattatcccgtgcg 125
|||||||||||||||||||||||||||||
Sbjct: 124 ccgcacgggataatcgattatcccgtgcg 96
>50905_osa-miRf11690-akr:pmrd
Length = 124
Score = 71.9 bits (36), Expect = 1e-13
Identities = 75/88 (85%)
Strand = Plus / Plus
Query: 39 ggcccgcctgcagctcatcgtctgggaaaatctttattttcgcgtgcgggcgtgccgacc 98
|||||| |||||||| |||||||| |||||| |||||| ||||||| || ||||||
Sbjct: 37 ggcccgtctgcagctggtcgtctggaaaaatcaccattttcacgtgcggacggaccgacc 96
Query: 99 gcacgggataatcgattatcccgtgcgg 126
||||||||||||||||| |||||||||
Sbjct: 97 acacgggataatcgattaacccgtgcgg 124
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 97 ccgcacgggataatcgattatcccgtg 123
||||||||| |||||||||||||||||
Sbjct: 124 ccgcacgggttaatcgattatcccgtg 98
>50312_osa-miRf11097-akr:pmrd
Length = 75
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 95 gaccgcacgggataatcgattatccc 120
||||||||||||||||||||||||||
Sbjct: 75 gaccgcacgggataatcgattatccc 50
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 103 gggataatcgattatcccgtgcgg 126
||||||||||||||||||||||||
Sbjct: 50 gggataatcgattatcccgtgcgg 73
Score = 40.1 bits (20), Expect = 4e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 95 gaccgcacgggataatcgattatcccgtgcgg 126
|||||||||||| ||| ||||||||| |||||
Sbjct: 1 gaccgcacgggaaaatagattatcccatgcgg 32
