miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51237_osa-miRf12022-akr:pmrd
Length = 137
Score = 115 bits (58), Expect = 6e-27
Identities = 89/98 (90%), Gaps = 1/98 (1%)
Strand = Plus / Plus
Query: 1 gtcgagctcgagcttggtcaagctcgagccgagcct-gtcagaaagcttgaacattttat 59
|||||||||||||||| || ||||| |||||||| || |||||||||||||||||||
Sbjct: 5 gtcgagctcgagcttgatcgagctccgaccgagccttgtttgaaagcttgaacattttat 64
Query: 60 aggctcggctcgagcttgtatcgagctcgagcctaggc 97
|| |||||||||||||||||||||||||||||||||||
Sbjct: 65 agactcggctcgagcttgtatcgagctcgagcctaggc 102
>50824_osa-miRf11609-akr:pmrd
Length = 76
Score = 87.7 bits (44), Expect = 1e-18
Identities = 59/64 (92%)
Strand = Plus / Plus
Query: 12 gcttggtcaagctcgagccgagcctgtcagaaagcttgaacattttataggctcggctcg 71
||||| || ||||||||||||||||||| ||||||| |||||||||||||||| ||||||
Sbjct: 2 gcttgatcgagctcgagccgagcctgtcggaaagctcgaacattttataggcttggctcg 61
Query: 72 agct 75
||||
Sbjct: 62 agct 65
>50535_osa-miRf11320-akr:pmrd
Length = 77
Score = 58.0 bits (29), Expect = 1e-09
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 11 agcttggtcaagctcgagccgagcctgtcagaaagcttgaacattttataggctcggctc 70
|||||| || ||||||| || |||||||| |||| | |||||||||||||||| |||||
Sbjct: 77 agcttgatcgagctcgaaccaagcctgtctaaaagttcgaacattttataggcttggctc 18
Query: 71 gagct 75
|||||
Sbjct: 17 gagct 13
>50536_osa-miRf11321-akr:pmrd
Length = 75
Score = 56.0 bits (28), Expect = 5e-09
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 12 gcttggtcaagctcgagccgagcctgtcagaaagcttgaacattttataggctcggctcg 71
||||| || ||||||| || |||||||| |||| | |||||||||||||||| ||||||
Sbjct: 1 gcttgatcgagctcgaaccaagcctgtctaaaagttcgaacattttataggcttggctcg 60
Query: 72 agct 75
||||
Sbjct: 61 agct 64
>50973_osa-miRf11758-akr:pmrd
Length = 112
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 63 ctcggctcgagcttgtatcgagctcgagc 91
|||||||||||||||| ||||||||||||
Sbjct: 76 ctcggctcgagcttgtgtcgagctcgagc 104
>50289_osa-miRf11074-akr:pmrd
Length = 108
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 62 gctcggctcgagcttgtatcgagctcgagcctaggc 97
||||||||||||||||| ||||| |||||| |||||
Sbjct: 73 gctcggctcgagcttgtgtcgagttcgagcttaggc 108
