miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>50860_osa-miRf11645-akr:pmrd
Length = 110
Score = 188 bits (95), Expect = 5e-49
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 1 ggtaccaggcctgatacctatgggtaccaggtctgacacctaaccatgacacctaggtac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 ggtaccaggcctgatacctatgggtaccaggtctgacacctaaccatgacacctaggtac 67
Query: 61 caagcctgatacctataggtatcaggtctgatacc 95
|||||||||||||||||||||||||||||||||||
Sbjct: 68 caagcctgatacctataggtatcaggtctgatacc 102
Score = 52.0 bits (26), Expect = 7e-08
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 1 ggtaccaggcctgatacctatgggtaccaggtctgacaccta 42
||||||| ||||||||||||| |||| ||||||||| |||||
Sbjct: 63 ggtaccaagcctgatacctataggtatcaggtctgataccta 104
Score = 50.1 bits (25), Expect = 3e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 55 aggtaccaagcctgatacctataggtatcaggtctga 91
|||||||| ||||||||||||| |||| |||||||||
Sbjct: 7 aggtaccaggcctgatacctatgggtaccaggtctga 43
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 51 acctaggtaccaagcctgatacctataggtatcagg 86
||||||||| || ||||||||||||||||||||||
Sbjct: 107 acctaggtatcagacctgatacctataggtatcagg 72
>49552_osa-miRf10337-akr:pmrd
Length = 95
Score = 83.8 bits (42), Expect = 2e-17
Identities = 57/62 (91%)
Strand = Plus / Minus
Query: 1 ggtaccaggcctgatacctatgggtaccaggtctgacacctaaccatgacacctaggtac 60
|||||||||||||||||||| || ||||||||||||||||||||||||| ||| || |||
Sbjct: 88 ggtaccaggcctgatacctacggataccaggtctgacacctaaccatgatacccagatac 29
Query: 61 ca 62
||
Sbjct: 28 ca 27
>50859_osa-miRf11644-akr:pmrd
Length = 98
Score = 75.8 bits (38), Expect = 5e-15
Identities = 44/46 (95%)
Strand = Plus / Minus
Query: 4 accaggcctgatacctatgggtaccaggtctgacacctaaccatga 49
||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 87 accaggcctgatatctacgggtaccaggtctgacacctaaccatga 42
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 1 ggtaccaggcctgatacctatgggtacc 28
||||||||||||||||||||||||||||
Sbjct: 28 ggtaccaggcctgatacctatgggtacc 1
>50039_osa-miRf10824-akr:pmrd
Length = 95
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 76 taggtatcaggtctgatacc 95
||||||||||||||||||||
Sbjct: 89 taggtatcaggtctgatacc 70
