miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32284_mmu-mir-671:mirbase
Length = 98
Score = 133 bits (67), Expect = 3e-32
Identities = 86/91 (94%), Gaps = 1/91 (1%)
Strand = Plus / Plus
Query: 10 gccaggaagaggaggaagccctggaggggctggagttgatgaatgttttcctccgggttc 69
||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||
Sbjct: 7 gccaggaagaggaggaagccctggaggggctggaggtgatggatgttttcctcc-ggttc 65
Query: 70 tcagggctccacctctttcgacccttagagc 100
||||||||||||||||||||| || ||||||
Sbjct: 66 tcagggctccacctctttcgagccgtagagc 96
>32285_mmu-mir-671:mirbase
Length = 98
Score = 133 bits (67), Expect = 3e-32
Identities = 86/91 (94%), Gaps = 1/91 (1%)
Strand = Plus / Plus
Query: 10 gccaggaagaggaggaagccctggaggggctggagttgatgaatgttttcctccgggttc 69
||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||
Sbjct: 7 gccaggaagaggaggaagccctggaggggctggaggtgatggatgttttcctcc-ggttc 65
Query: 70 tcagggctccacctctttcgacccttagagc 100
||||||||||||||||||||| || ||||||
Sbjct: 66 tcagggctccacctctttcgagccgtagagc 96
>28108_mml-mir-671:mirbase
Length = 118
Score = 127 bits (64), Expect = 2e-30
Identities = 77/80 (96%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 10 gccaggaagaggaggaagccctggaggggctggagttgatgaatgttttcctccgggttc 69
||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||
Sbjct: 17 gccaggaagaggaggaagccctggaggggctggaggtgatggatgttttcctcc-ggttc 75
Query: 70 tcagggctccacctctttcg 89
||||||||||||||||||||
Sbjct: 76 tcagggctccacctctttcg 95
>28109_mml-mir-671:mirbase
Length = 118
Score = 127 bits (64), Expect = 2e-30
Identities = 77/80 (96%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 10 gccaggaagaggaggaagccctggaggggctggagttgatgaatgttttcctccgggttc 69
||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||
Sbjct: 17 gccaggaagaggaggaagccctggaggggctggaggtgatggatgttttcctcc-ggttc 75
Query: 70 tcagggctccacctctttcg 89
||||||||||||||||||||
Sbjct: 76 tcagggctccacctctttcg 95
>28988_hsa-mir-671:mirbase
Length = 118
Score = 127 bits (64), Expect = 2e-30
Identities = 77/80 (96%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 10 gccaggaagaggaggaagccctggaggggctggagttgatgaatgttttcctccgggttc 69
||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||
Sbjct: 17 gccaggaagaggaggaagccctggaggggctggaggtgatggatgttttcctcc-ggttc 75
Query: 70 tcagggctccacctctttcg 89
||||||||||||||||||||
Sbjct: 76 tcagggctccacctctttcg 95
>28989_hsa-mir-671:mirbase
Length = 118
Score = 127 bits (64), Expect = 2e-30
Identities = 77/80 (96%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 10 gccaggaagaggaggaagccctggaggggctggagttgatgaatgttttcctccgggttc 69
||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||
Sbjct: 17 gccaggaagaggaggaagccctggaggggctggaggtgatggatgttttcctcc-ggttc 75
Query: 70 tcagggctccacctctttcg 89
||||||||||||||||||||
Sbjct: 76 tcagggctccacctctttcg 95
>30588_ptr-mir-671:mirbase
Length = 117
Score = 127 bits (64), Expect = 2e-30
Identities = 77/80 (96%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 10 gccaggaagaggaggaagccctggaggggctggagttgatgaatgttttcctccgggttc 69
||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||
Sbjct: 16 gccaggaagaggaggaagccctggaggggctggaggtgatggatgttttcctcc-ggttc 74
Query: 70 tcagggctccacctctttcg 89
||||||||||||||||||||
Sbjct: 75 tcagggctccacctctttcg 94
>31233_ppy-mir-671:mirbase
Length = 118
Score = 127 bits (64), Expect = 2e-30
Identities = 77/80 (96%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 10 gccaggaagaggaggaagccctggaggggctggagttgatgaatgttttcctccgggttc 69
||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||
Sbjct: 17 gccaggaagaggaggaagccctggaggggctggaggtgatggatgttttcctcc-ggttc 75
Query: 70 tcagggctccacctctttcg 89
||||||||||||||||||||
Sbjct: 76 tcagggctccacctctttcg 95
>31234_ppy-mir-671:mirbase
Length = 118
Score = 127 bits (64), Expect = 2e-30
Identities = 77/80 (96%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 10 gccaggaagaggaggaagccctggaggggctggagttgatgaatgttttcctccgggttc 69
||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||
Sbjct: 17 gccaggaagaggaggaagccctggaggggctggaggtgatggatgttttcctcc-ggttc 75
Query: 70 tcagggctccacctctttcg 89
||||||||||||||||||||
Sbjct: 76 tcagggctccacctctttcg 95
>32974_rno-mir-671:mirbase
Length = 81
Score = 125 bits (63), Expect = 6e-30
Identities = 76/79 (96%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 12 caggaagaggaggaagccctggaggggctggagttgatgaatgttttcctccgggttctc 71
||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||
Sbjct: 1 caggaagaggaggaagccctggaggggctggaggtgatggatgttttcctcc-ggttctc 59
Query: 72 agggctccacctctttcga 90
|||||||||||||||||||
Sbjct: 60 agggctccacctctttcga 78
>27253_eca-mir-671:mirbase
Length = 84
Score = 121 bits (61), Expect = 1e-28
Identities = 74/77 (96%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 10 gccaggaagaggaggaagccctggaggggctggagttgatgaatgttttcctccgggttc 69
||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||
Sbjct: 2 gccaggaagaggaggaagccctggaggggctggaggtgatggatgttttcctcc-ggttc 60
Query: 70 tcagggctccacctctt 86
|||||||||||||||||
Sbjct: 61 tcagggctccacctctt 77
>27254_eca-mir-671:mirbase
Length = 84
Score = 121 bits (61), Expect = 1e-28
Identities = 74/77 (96%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 10 gccaggaagaggaggaagccctggaggggctggagttgatgaatgttttcctccgggttc 69
||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||
Sbjct: 2 gccaggaagaggaggaagccctggaggggctggaggtgatggatgttttcctcc-ggttc 60
Query: 70 tcagggctccacctctt 86
|||||||||||||||||
Sbjct: 61 tcagggctccacctctt 77
>26899_cfa-mir-671:mirbase
Length = 74
Score = 117 bits (59), Expect = 2e-27
Identities = 72/75 (96%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 12 caggaagaggaggaagccctggaggggctggagttgatgaatgttttcctccgggttctc 71
||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||
Sbjct: 1 caggaagaggaggaagccctggaggggctggaggtgatggatgttttcctcc-ggttctc 59
Query: 72 agggctccacctctt 86
|||||||||||||||
Sbjct: 60 agggctccacctctt 74
>33447_bta-mir-671:mirbase
Length = 118
Score = 115 bits (58), Expect = 6e-27
Identities = 71/74 (95%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 10 gccaggaagaggaggaagccctggaggggctggagttgatgaatgttttcctccgggttc 69
||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||
Sbjct: 17 gccaggaagaggaggaagccctggaggggctggaggtgatggatgttttcctcc-ggttc 75
Query: 70 tcagggctccacct 83
||||||||||||||
Sbjct: 76 tcagggctccacct 89
