miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>50879_osa-miRf11664-akr:pmrd
Length = 75
Score = 149 bits (75), Expect = 3e-37
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 1 tctggaccgtttggcacagctccggctctatataagttggagttgggagctagagctgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tctggaccgtttggcacagctccggctctatataagttggagttgggagctagagctgtg 60
Query: 61 ccaaaccggcccaga 75
|||||||||||||||
Sbjct: 61 ccaaaccggcccaga 75
>50534_osa-miRf11319-akr:pmrd
Length = 79
Score = 83.8 bits (42), Expect = 2e-17
Identities = 61/66 (92%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 1 tctggaccgtttggcacagctccggctctatataagttggagttgggagctagagctgtg 60
|||||||||||||||||| ||||||||| | ||||||| ||||||||||||||||||||
Sbjct: 4 tctggaccgtttggcacaactccggctccaggtaagttg-agttgggagctagagctgtg 62
Query: 61 ccaaac 66
||||||
Sbjct: 63 ccaaac 68
>50432_osa-miRf11217-akr:pmrd
Length = 69
Score = 52.0 bits (26), Expect = 5e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 33 taagttggagttgggagctagagctgtgccaaac 66
||||||||||||| ||||| ||||||||||||||
Sbjct: 30 taagttggagttgagagctggagctgtgccaaac 63
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 7 ccgtttggcacagctccggctct 29
||||||||||||||||| |||||
Sbjct: 65 ccgtttggcacagctccagctct 43
>50218_osa-miRf11003-akr:pmrd
Length = 84
Score = 52.0 bits (26), Expect = 5e-08
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 46 ggagctagagctgtgccaaaccggcccaga 75
||||||||||||||||||||| ||||||||
Sbjct: 36 ggagctagagctgtgccaaacaggcccaga 7
>49656_osa-miRf10441-akr:pmrd
Length = 77
Score = 52.0 bits (26), Expect = 5e-08
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 9 gtttggcacagctccggctctatataagttggagttgggagctagagctgtgccaaac 66
||||||||||||||| |||| | |||||| ||| || ||||| ||||||||||||||
Sbjct: 13 gtttggcacagctcctgctccaggtaagttcgaggtgagagctggagctgtgccaaac 70
>49974_osa-miRf10759-akr:pmrd
Length = 83
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 46 ggagctagagctgtgccaaaccggccc 72
||||||||||||||||||||| |||||
Sbjct: 35 ggagctagagctgtgccaaacaggccc 9
>49383_osa-miRf10168-akr:pmrd
Length = 75
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 47 gagctagagctgtgccaaaccggccc 72
|||||||||||||||||||| |||||
Sbjct: 29 gagctagagctgtgccaaacaggccc 4
>50830_osa-miRf11615-akr:pmrd
Length = 67
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 46 ggagctagagctgtgccaaac 66
|||||||||||||||||||||
Sbjct: 45 ggagctagagctgtgccaaac 65
>50725_osa-miRf11510-akr:pmrd
Length = 81
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 47 gagctagagctgtgccaaac 66
||||||||||||||||||||
Sbjct: 32 gagctagagctgtgccaaac 13
>50724_osa-miRf11509-akr:pmrd
Length = 83
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 47 gagctagagctgtgccaaac 66
||||||||||||||||||||
Sbjct: 33 gagctagagctgtgccaaac 14
>50723_osa-miRf11508-akr:pmrd
Length = 90
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 47 gagctagagctgtgccaaac 66
||||||||||||||||||||
Sbjct: 36 gagctagagctgtgccaaac 17
