miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00885;MIR821;AAAA02031645.1/4498-4258 39946:Oryza sativa Indica
Group
Length = 241
Score = 212 bits (107), Expect = 7e-55
Identities = 113/115 (98%)
Strand = Plus / Plus
Query: 1 ttaccctatggccgatcacagatgagtcatcagtgacgggcctgattgtcatctcaatcg 60
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 64 ttaccctatggccggtcacagatgagtcatccgtgacgggcctgattgtcatctcaatcg 123
Query: 61 ggcattagtatgcaccccgtcaccgatgagtcatcagtgacgggccctacggtaa 115
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 ggcattagtatgcaccccgtcaccgatgagtcatcagtgacgggccctacggtaa 178
>RF00885;MIR821;AAAA02038150.1/5969-6231 39946:Oryza sativa Indica
Group
Length = 263
Score = 167 bits (84), Expect = 4e-41
Identities = 105/112 (93%)
Strand = Plus / Minus
Query: 1 ttaccctatggccgatcacagatgagtcatcagtgacgggcctgattgtcatctcaatcg 60
|||||||||||||| |||||||||||||||| ||||| || |||||||||||||||||||
Sbjct: 190 ttaccctatggccggtcacagatgagtcatccgtgacaggtctgattgtcatctcaatcg 131
Query: 61 ggcattagtatgcaccccgtcaccgatgagtcatcagtgacgggccctacgg 112
|||||||||||| | |||||||||||||||||||| ||||||||||||||||
Sbjct: 130 ggcattagtatggagcccgtcaccgatgagtcatctgtgacgggccctacgg 79
>RF00885;MIR821;AC130730.2/34116-34410 39947:Oryza sativa Japonica
Group
Length = 295
Score = 159 bits (80), Expect = 1e-38
Identities = 104/112 (92%)
Strand = Plus / Plus
Query: 1 ttaccctatggccgatcacagatgagtcatcagtgacgggcctgattgtcatctcaatcg 60
||||||||| |||| |||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 91 ttaccctattgccggtcacagatgagttatccgtgacgggcctgattgtcatctcaatcg 150
Query: 61 ggcattagtatgcaccccgtcaccgatgagtcatcagtgacgggccctacgg 112
|||||||||| || |||||||||||||||||||| ||||||||||||||||
Sbjct: 151 agcattagtatacagcccgtcaccgatgagtcatctgtgacgggccctacgg 202
>RF00885;MIR821;AP004836.2/137413-137675 39947:Oryza sativa Japonica
Group
Length = 263
Score = 153 bits (77), Expect = 6e-37
Identities = 92/97 (94%)
Strand = Plus / Minus
Query: 16 tcacagatgagtcatcagtgacgggcctgattgtcatctcaatcgggcattagtatgcac 75
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 175 tcacagatgagtcatccgtgacgggcctgaatgtcatctcaatcgggcattagtatggag 116
Query: 76 cccgtcaccgatgagtcatcagtgacgggccctacgg 112
|||||||||||||||||||| ||||||||||||||||
Sbjct: 115 cccgtcaccgatgagtcatctgtgacgggccctacgg 79
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 76 cccgtcaccgatgagtcatcagtgacgggcc 106
|||||||| ||||||||||| ||||||||||
Sbjct: 179 cccgtcacagatgagtcatccgtgacgggcc 149
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 76 cccgtcaccgatgagtcatcagtgacgggcccta 109
|||||||| ||||| ||||| |||||||||||||
Sbjct: 151 cccgtcacggatgactcatctgtgacgggcccta 184
>RF00885;MIR821;ABRL01001211.1/3148-3410 65489:Oryza barthii
Length = 263
Score = 149 bits (75), Expect = 9e-36
Identities = 96/103 (93%)
Strand = Plus / Minus
Query: 10 ggccgatcacagatgagtcatcagtgacgggcctgattgtcatctcaatcgggcattagt 69
|||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct: 181 ggcccatcacagatgagtcatccgtgacgggcctgaatgtcatctcaatcgggcattaga 122
Query: 70 atgcaccccgtcaccgatgagtcatcagtgacgggccctacgg 112
||| | |||||||||||||||||||| ||||||||||||||||
Sbjct: 121 atggagcccgtcaccgatgagtcatctgtgacgggccctacgg 79
>RF00885;MIR821;AP006846.2/21640-21904 39947:Oryza sativa Japonica
Group
Length = 265
Score = 145 bits (73), Expect = 1e-34
Identities = 91/97 (93%)
Strand = Plus / Minus
Query: 16 tcacagatgagtcatcagtgacgggcctgattgtcatctcaatcgggcattagtatgcac 75
|||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||| |
Sbjct: 175 tcacagatgagtcatccgtgacgggcctgaatgtcatctcaattgggcattagtatggag 116
Query: 76 cccgtcaccgatgagtcatcagtgacgggccctacgg 112
|||||||||||||||||||| ||||||||||||||||
Sbjct: 115 cccgtcaccgatgagtcatctgtgacgggccctacgg 79
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 76 cccgtcaccgatgagtcatcagtgacgggcc 106
|||||||| ||||||||||| ||||||||||
Sbjct: 179 cccgtcacagatgagtcatccgtgacgggcc 149
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 76 cccgtcaccgatgagtcatcagtgacgggcccta 109
|||||||| ||||| ||||| |||||||||||||
Sbjct: 151 cccgtcacggatgactcatctgtgacgggcccta 184
>RF00885;MIR821;AC027659.1/116736-116998 39947:Oryza sativa Japonica
Group
Length = 263
Score = 145 bits (73), Expect = 1e-34
Identities = 91/97 (93%)
Strand = Plus / Minus
Query: 16 tcacagatgagtcatcagtgacgggcctgattgtcatctcaatcgggcattagtatgcac 75
|||||||||||||||| |||| |||||||| |||||||||||||||||||||||||| |
Sbjct: 175 tcacagatgagtcatccgtgatgggcctgaatgtcatctcaatcgggcattagtatggag 116
Query: 76 cccgtcaccgatgagtcatcagtgacgggccctacgg 112
|||||||||||||||||||| ||||||||||||||||
Sbjct: 115 cccgtcaccgatgagtcatctgtgacgggccctacgg 79
>RF00885;MIR821;AC134235.2/19664-19400 39947:Oryza sativa Japonica
Group
Length = 265
Score = 137 bits (69), Expect = 4e-32
Identities = 90/97 (92%)
Strand = Plus / Plus
Query: 16 tcacagatgagtcatcagtgacgggcctgattgtcatctcaatcgggcattagtatgcac 75
|||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||| |
Sbjct: 91 tcacagatgagtcatccgtgacggacctgaatgtcatctcaatcgggcattagtatggag 150
Query: 76 cccgtcaccgatgagtcatcagtgacgggccctacgg 112
|||||||| ||||||||||| ||||||||||||||||
Sbjct: 151 cccgtcacagatgagtcatctgtgacgggccctacgg 187
>RF00885;MIR821;AAAA02035201.1/1122-1416 39946:Oryza sativa Indica
Group
Length = 295
Score = 131 bits (66), Expect = 2e-30
Identities = 84/90 (93%)
Strand = Plus / Minus
Query: 16 tcacagatgagtcatcagtgacgggcctgattgtcatctcaatcgggcattagtatgcac 75
|||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||| |
Sbjct: 190 tcacagatgagtcatccgtgacgggcctgaatgtcatctgaatcgggcattagtatggag 131
Query: 76 cccgtcaccgatgagtcatcagtgacgggc 105
|||||||||||||||||||| |||||||||
Sbjct: 130 cccgtcaccgatgagtcatctgtgacgggc 101
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 76 cccgtcaccgatgagtcatcagtgacgggcc 106
|||||||| ||||||||||| ||||||||||
Sbjct: 194 cccgtcacagatgagtcatccgtgacgggcc 164
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 76 cccgtcaccgatgagtcatcagtgacgggcccta 109
|||||||| ||||| ||||| |||||||||||||
Sbjct: 166 cccgtcacggatgactcatctgtgacgggcccta 199
>RF00885;MIR821;AL662986.3/147012-147253 39947:Oryza sativa Japonica
Group
Length = 242
Score = 129 bits (65), Expect = 9e-30
Identities = 89/97 (91%)
Strand = Plus / Minus
Query: 16 tcacagatgagtcatcagtgacgggcctgattgtcatctcaatcgggcattagtatgcac 75
|||||||||||||||| ||||||||||| | |||||||||||||||| ||||||||| |
Sbjct: 164 tcacagatgagtcatccgtgacgggccttaatgtcatctcaatcgggtattagtatggag 105
Query: 76 cccgtcaccgatgagtcatcagtgacgggccctacgg 112
|||||||| ||||||||||| ||||||||||||||||
Sbjct: 104 cccgtcacagatgagtcatctgtgacgggccctacgg 68
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 76 cccgtcaccgatgagtcatcagtgacgggcc 106
|||||||| ||||||||||| ||||||||||
Sbjct: 168 cccgtcacagatgagtcatccgtgacgggcc 138
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 76 cccgtcaccgatgagtcatcagtgacgggcccta 109
|||||||| ||||| ||||| |||||||||||||
Sbjct: 140 cccgtcacggatgactcatctgtgacgggcccta 173
>RF00885;MIR821;AAAA02021637.1/13691-13953 39946:Oryza sativa Indica
Group
Length = 263
Score = 121 bits (61), Expect = 2e-27
Identities = 88/97 (90%)
Strand = Plus / Minus
Query: 16 tcacagatgagtcatcagtgacgggcctgattgtcatctcaatcgggcattagtatgcac 75
||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||| |
Sbjct: 175 tcacagatgagtcattcgtgacgggcctgaatgtcatctcaatcgagcattagtatggag 116
Query: 76 cccgtcaccgatgagtcatcagtgacgggccctacgg 112
|||||||||||||||||||| |||| ||||| |||||
Sbjct: 115 cccgtcaccgatgagtcatctgtgatgggccgtacgg 79
>RF00885;MIR821;AC136216.2/82872-82610 39947:Oryza sativa Japonica
Group
Length = 263
Score = 121 bits (61), Expect = 2e-27
Identities = 88/97 (90%)
Strand = Plus / Minus
Query: 16 tcacagatgagtcatcagtgacgggcctgattgtcatctcaatcgggcattagtatgcac 75
|||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |
Sbjct: 175 tcacagatgagtcatccctgacgggcctgaatgtcatctcaatcgggcattagtatggag 116
Query: 76 cccgtcaccgatgagtcatcagtgacgggccctacgg 112
|| ||||||||||| ||||| ||||||| ||||||||
Sbjct: 115 cctgtcaccgatgactcatctgtgacggaccctacgg 79
>RF00885;MIR821;AC090486.3/114827-115091 4530:Oryza sativa (rice)
Length = 265
Score = 109 bits (55), Expect = 8e-24
Identities = 85/95 (89%)
Strand = Plus / Minus
Query: 18 acagatgagtcatcagtgacgggcctgattgtcatctcaatcgggcattagtatgcaccc 77
|||||||||||||| |||||||| ||| |||||||| |||| |||||||||||| | ||
Sbjct: 173 acagatgagtcatccgtgacgggtttgaatgtcatcttaatcaggcattagtatggagcc 114
Query: 78 cgtcaccgatgagtcatcagtgacgggccctacgg 112
|||||||||||||||||| |||||||| |||||||
Sbjct: 113 cgtcaccgatgagtcatctgtgacgggtcctacgg 79
>RF00885;MIR821;AP008215.1/10141835-10141545 39947:Oryza sativa
Japonica Group
Length = 291
Score = 69.9 bits (35), Expect = 7e-12
Identities = 50/55 (90%)
Strand = Plus / Minus
Query: 51 atctcaatcgggcattagtatgcaccccgtcaccgatgagtcatcagtgacgggc 105
|||||||||||||||||||||| | |||||||||||||| ||||| ||||||||
Sbjct: 165 atctcaatcgggcattagtatggagcccgtcaccgatgactcatctatgacgggc 111
