miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51071_osa-miRf11856-akr:pmrd
Length = 80
Score = 93.7 bits (47), Expect = 2e-20
Identities = 71/79 (89%)
Strand = Plus / Plus
Query: 10 cgataagagtcatcgatgacgggcattcaggccatctcaatcgggccttctttggagccc 69
||||||||||||||| ||| ||||||| | ||||||||||||| ||||| ||||| ||||
Sbjct: 1 cgataagagtcatcggtgatgggcattaaagccatctcaatcgagccttttttggtgccc 60
Query: 70 gtcaccgatgacactcatc 88
|||||||||||| ||||||
Sbjct: 61 gtcaccgatgacgctcatc 79
>50655_osa-miRf11440-akr:pmrd
Length = 78
Score = 67.9 bits (34), Expect = 1e-12
Identities = 67/78 (85%)
Strand = Plus / Minus
Query: 11 gataagagtcatcgatgacgggcattcaggccatctcaatcgggccttctttggagcccg 70
|||| ||||||||| |||||||| || | | |||||||||| |||| | |||| ||||||
Sbjct: 78 gatatgagtcatcggtgacgggctttaaagtcatctcaatcaggccatatttgaagcccg 19
Query: 71 tcaccgatgacactcatc 88
||||||||||| ||||||
Sbjct: 18 tcaccgatgaccctcatc 1
>50623_osa-miRf11408-akr:pmrd
Length = 78
Score = 60.0 bits (30), Expect = 3e-10
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 43 atctcaatcgggccttctttggagcccgtcaccgatgacactcatc 88
|||||||||||||| | |||| ||||||||||||||||| ||||||
Sbjct: 46 atctcaatcgggccatatttgtagcccgtcaccgatgaccctcatc 1
>50948_osa-miRf11733-akr:pmrd
Length = 112
Score = 58.0 bits (29), Expect = 1e-09
Identities = 51/57 (89%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 43 atctcaatcgggcct-tctttggagcccgtcaccgatgacactcatctatgacgggc 98
||||||||||||||| | |||||||||||||| |||||| ||||||| ||||||||
Sbjct: 48 atctcaatcgggcctctagttggagcccgtcacagatgaccctcatctgtgacgggc 104
>50356_osa-miRf11141-akr:pmrd
Length = 115
Score = 58.0 bits (29), Expect = 1e-09
Identities = 51/57 (89%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 43 atctcaatcgggcct-tctttggagcccgtcaccgatgacactcatctatgacgggc 98
||||||||||||||| | |||||||||||||| |||||| ||||||| ||||||||
Sbjct: 51 atctcaatcgggcctctagttggagcccgtcacagatgaccctcatctgtgacgggc 107
>50696_osa-miRf11481-akr:pmrd
Length = 81
Score = 56.0 bits (28), Expect = 5e-09
Identities = 44/48 (91%), Gaps = 1/48 (2%)
Strand = Plus / Minus
Query: 43 atctcaatcgggcct-tctttggagcccgtcaccgatgacactcatct 89
||||||||||||||| | |||||||||||||| ||||||||||||||
Sbjct: 48 atctcaatcgggcctctagttggagcccgtcacagatgacactcatct 1
>49764_osa-miRf10549-akr:pmrd
Length = 135
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 65 agcccgtcaccgatgacactcatctatgacg 95
||||||||||||||||||||||||| |||||
Sbjct: 65 agcccgtcaccgatgacactcatctgtgacg 35
>50068_osa-miRf10853-akr:pmrd
Length = 130
Score = 52.0 bits (26), Expect = 8e-08
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 65 agcccgtcaccgatgacactcatctatgacgggc 98
||||||||||||||||||||||||| ||| ||||
Sbjct: 63 agcccgtcaccgatgacactcatctgtgatgggc 30
>51165_osa-miRf11950-akr:pmrd
Length = 105
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 75 cgatgacactcatctatgacgggc 98
||||||||||||||||||||||||
Sbjct: 1 cgatgacactcatctatgacgggc 24
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 75 cgatgacactcatctatgacgggc 98
||||||||||||||| ||||||||
Sbjct: 105 cgatgacactcatctgtgacgggc 82
>49990_osa-miRf10775-akr:pmrd
Length = 91
Score = 46.1 bits (23), Expect = 5e-06
Identities = 39/43 (90%), Gaps = 1/43 (2%)
Strand = Plus / Minus
Query: 43 atctcaatcgggcct-tctttggagcccgtcaccgatgacact 84
||||||||||||||| | |||||||||||||| |||||||||
Sbjct: 53 atctcaatcgggcctctagttggagcccgtcacggatgacact 11
>49989_osa-miRf10774-akr:pmrd
Length = 97
Score = 46.1 bits (23), Expect = 5e-06
Identities = 39/43 (90%), Gaps = 1/43 (2%)
Strand = Plus / Plus
Query: 43 atctcaatcgggcct-tctttggagcccgtcaccgatgacact 84
||||||||||||||| | |||||||||||||| |||||||||
Sbjct: 42 atctcaatcgggcctctagttggagcccgtcacggatgacact 84
>49923_osa-miRf10708-akr:pmrd
Length = 100
Score = 42.1 bits (21), Expect = 7e-05
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 66 gcccgtcaccgatgacactcatctatgacgggc 98
||||||||| |||||| || |||||||||||||
Sbjct: 85 gcccgtcacagatgacccttatctatgacgggc 53
>49288_osa-miRf10073-akr:pmrd
Length = 109
Score = 40.1 bits (20), Expect = 3e-04
Identities = 36/40 (90%), Gaps = 1/40 (2%)
Strand = Plus / Plus
Query: 42 catctcaatcgggccttctt-tggagcccgtcaccgatga 80
|||||||||||||| || | |||||||||||||||||||
Sbjct: 47 catctcaatcgggcattagtatggagcccgtcaccgatga 86
>49066_osa-miR817:pmrd
Length = 83
Score = 40.1 bits (20), Expect = 3e-04
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 61 ttggagcccgtcaccgatgacactcatctatgacgg 96
|||||||||||||| |||||| ||||| |||||||
Sbjct: 63 ttggagcccgtcacggatgaccatcatccatgacgg 28
