miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>49004_osa-miR442:pmrd
Length = 233
Score = 200 bits (101), Expect = 2e-52
Identities = 125/133 (93%)
Strand = Plus / Plus
Query: 10 cgtgtaaattgcgagacggatcttttaagcctaattgcaccataatttgacaatgtggtg 69
|||||||||||||||||| ||||||||||||||||||| |||| || |||||||||||||
Sbjct: 55 cgtgtaaattgcgagacgaatcttttaagcctaattgctccatgatctgacaatgtggtg 114
Query: 70 ctaaagtaaacatttgctaatgatggattaattaggcttaataaattcgtctcgcggttt 129
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct: 115 ctacagtaaacatttgctaatgacggattaattaggcttaataaattcgtctcgcagttt 174
Query: 130 acaggcggattct 142
|||| ||||||||
Sbjct: 175 acagacggattct 187
>50149_osa-miRf10934-akr:pmrd
Length = 143
Score = 117 bits (59), Expect = 2e-27
Identities = 92/103 (89%)
Strand = Plus / Plus
Query: 15 aaattgcgagacggatcttttaagcctaattgcaccataatttgacaatgtggtgctaaa 74
|||| |||||||| |||||||| |||||||||| ||||||||| ||||||| ||| || |
Sbjct: 14 aaatcgcgagacgaatcttttaggcctaattgcgccataatttaacaatgttgtggtaca 73
Query: 75 gtaaacatttgctaatgatggattaattaggcttaataaattc 117
||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 74 ataaacatttgctaatgacggattaattaggcttcataaattc 116
>49008_osa-miR445a:pmrd
Length = 268
Score = 113 bits (57), Expect = 4e-26
Identities = 93/105 (88%)
Strand = Plus / Minus
Query: 20 gcgagacggatcttttaagcctaattgcaccataatttgacaatgtggtgctaaagtaaa 79
|||||||| ||||||| || |||||| |||||| ||||||||||||| ||||| ||||||
Sbjct: 186 gcgagacgaatcttttgagtctaattacaccatgatttgacaatgtgatgctacagtaaa 127
Query: 80 catttgctaatgatggattaattaggcttaataaattcgtctcgc 124
| ||| |||| ||||||||||||||||||| |||||||||||||
Sbjct: 126 cttttcataattatggattaattaggcttaaaaaattcgtctcgc 82
>50021_osa-miRf10806-akr:pmrd
Length = 123
Score = 61.9 bits (31), Expect = 1e-10
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 79 acatttgctaatgatggattaattaggcttaataaattcgtctcgcggttt 129
|||| ||||||||| |||||||||||||| || | ||||||||||||||||
Sbjct: 53 acatgtgctaatgacggattaattaggctcaaaagattcgtctcgcggttt 3
Score = 46.1 bits (23), Expect = 7e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 15 aaattgcgagacggatcttttaagcctaatt 45
|||| |||||||| |||||||||||||||||
Sbjct: 121 aaatcgcgagacgaatcttttaagcctaatt 91
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 98 taattaggcttaataaattcgtctcgcg 125
||||||||||||| | ||||||||||||
Sbjct: 90 taattaggcttaaaagattcgtctcgcg 117
>49015_osa-miR445h:pmrd
Length = 277
Score = 61.9 bits (31), Expect = 1e-10
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 74 agtaaacatttgctaatgatggattaattaggcttaataaattcgtctcgc 124
||||||| ||| |||| ||||||||||||||||||| |||||||||||||
Sbjct: 145 agtaaacttttcataattatggattaattaggcttaaaaaattcgtctcgc 95
>49014_osa-miR445g:pmrd
Length = 275
Score = 61.9 bits (31), Expect = 1e-10
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 74 agtaaacatttgctaatgatggattaattaggcttaataaattcgtctcgc 124
||||||| ||| |||| ||||||||||||||||||| |||||||||||||
Sbjct: 144 agtaaacttttcataattatggattaattaggcttaaaaaattcgtctcgc 94
>49012_osa-miR445e:pmrd
Length = 265
Score = 61.9 bits (31), Expect = 1e-10
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 74 agtaaacatttgctaatgatggattaattaggcttaataaattcgtctcgc 124
||||||| ||| |||| ||||||||||||||||||| |||||||||||||
Sbjct: 139 agtaaacttttcataattatggattaattaggcttaaaaaattcgtctcgc 89
>49010_osa-miR445c:pmrd
Length = 260
Score = 61.9 bits (31), Expect = 1e-10
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 74 agtaaacatttgctaatgatggattaattaggcttaataaattcgtctcgc 124
||||||| ||| |||| ||||||||||||||||||| |||||||||||||
Sbjct: 137 agtaaacttttcataattatggattaattaggcttaaaaaattcgtctcgc 87
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 21 cgagacggatcttttaagcctaattgcaccat 52
||||||| ||||||||||||||||| ||||||
Sbjct: 173 cgagacgaatcttttaagcctaattacaccat 142
>49455_osa-miRf10240-akr:pmrd
Length = 128
Score = 58.0 bits (29), Expect = 2e-09
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 79 acatttgctaatgatggattaattaggcttaataaattcgtctcgcggtttacaggc 135
|||| ||||||| | |||||||||||||| || | |||||||||||||||| |||||
Sbjct: 72 acatgtgctaataacggattaattaggctcaaaagattcgtctcgcggtttccaggc 128
>49652_osa-miRf10437-akr:pmrd
Length = 120
Score = 56.0 bits (28), Expect = 7e-09
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 86 ctaatgatggattaattaggcttaataaattcgtctcgcggttt 129
|||||||||||||||||| ||| || | ||||||||||||||||
Sbjct: 75 ctaatgatggattaattatgctcaaaagattcgtctcgcggttt 118
>49013_osa-miR445f:pmrd
Length = 305
Score = 54.0 bits (27), Expect = 3e-08
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 74 agtaaacatttgctaatgatggattaattaggcttaataaattcgtc 120
||||||| ||| |||| ||||||||||||||||||| |||||||||
Sbjct: 160 agtaaacttttcataattatggattaattaggcttaaaaaattcgtc 114
>49009_osa-miR445b:pmrd
Length = 264
Score = 54.0 bits (27), Expect = 3e-08
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 74 agtaaacatttgctaatgatggattaattaggcttaataaattcgtctcgc 124
||||||| ||| |||| ||||||||||||||||||| || ||||||||||
Sbjct: 138 agtaaacttttcataattatggattaattaggcttaaaaagttcgtctcgc 88
>51249_osa-miRf12034-akr:pmrd
Length = 121
Score = 52.0 bits (26), Expect = 1e-07
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 84 tgctaatgatggattaattaggcttaataaattcgtctcgcggttt 129
||||||||| |||||||||||||| || | |||| |||||||||||
Sbjct: 74 tgctaatgacggattaattaggctcaagagattcatctcgcggttt 119
>51000_osa-miRf11785-akr:pmrd
Length = 128
Score = 50.1 bits (25), Expect = 5e-07
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 87 taatgatggattaattaggcttaataaattcgtctcgcggtttacaggc 135
|||||| || ||||||||||| || | |||||||||||||||| |||||
Sbjct: 49 taatgacggcttaattaggctcaaaagattcgtctcgcggtttccaggc 1
>49011_osa-miR445d:pmrd
Length = 312
Score = 50.1 bits (25), Expect = 5e-07
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 62 atgtggtgctaaagtaaacatttgctaatgatggattaattaggcttaa 110
||||| ||||| | ||||||| || |||| |||||||||||||||||||
Sbjct: 145 atgtgatgctacactaaacatgtgttaattatggattaattaggcttaa 193
>49733_osa-miRf10518-akr:pmrd
Length = 122
Score = 48.1 bits (24), Expect = 2e-06
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 86 ctaatgatggattaattaggcttaataaattcgtctcgcggttt 129
||||||| || ||||||||||| || | ||||||||||||||||
Sbjct: 47 ctaatgacggcttaattaggctcaaaagattcgtctcgcggttt 4
>51205_osa-miRf11990-akr:pmrd
Length = 135
Score = 46.1 bits (23), Expect = 7e-06
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 87 taatgatggattaattaggcttaataaattcgtctcgcg 125
|||| |||||||||||||||| |||| ||| ||||||||
Sbjct: 48 taatcatggattaattaggctcaatagatttgtctcgcg 10
>49016_osa-miR445i:pmrd
Length = 244
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 87 taatgatggattaattaggcttaa 110
|||| |||||||||||||||||||
Sbjct: 133 taattatggattaattaggcttaa 110
