miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00886;MIR807;AACV01024453.1/6666-6840 39947:Oryza sativa Japonica
Group
Length = 175
Score = 149 bits (75), Expect = 7e-36
Identities = 84/87 (96%)
Strand = Plus / Minus
Query: 1 tgttccattaggatgaggatgtggcatcctattaatttcgtgcgatggctggtaatagga 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 131 tgttccattaggatgaggatgtgacatcctattaatttcgtgcgatggctggtaatagga 72
Query: 61 tgctatgtcctcatcctaggtgaaaca 87
|||||||||||| ||||| ||||||||
Sbjct: 71 tgctatgtcctcgtcctaagtgaaaca 45
>RF00886;MIR807;AACV01013996.1/51-226 39947:Oryza sativa Japonica
Group
Length = 176
Score = 127 bits (64), Expect = 2e-29
Identities = 76/80 (95%)
Strand = Plus / Minus
Query: 8 ttaggatgaggatgtggcatcctattaatttcgtgcgatggctggtaataggatgctatg 67
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 124 ttaggatgaggatgtggtatcctattaatttcgtgcgatggctggtaataggatgccatg 65
Query: 68 tcctcatcctaggtgaaaca 87
|| ||||| |||||||||||
Sbjct: 64 tcttcatcttaggtgaaaca 45
>RF00886;MIR807;AP004053.3/94478-94302 39947:Oryza sativa Japonica
Group
Length = 177
Score = 125 bits (63), Expect = 1e-28
Identities = 75/79 (94%)
Strand = Plus / Minus
Query: 9 taggatgaggatgtggcatcctattaatttcgtgcgatggctggtaataggatgctatgt 68
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 123 taggatgaggatgtggcaccctattaatttcgtgcgatggctggtaataggatgatatgt 64
Query: 69 cctcatcctaggtgaaaca 87
|||| |||||| |||||||
Sbjct: 63 cctcgtcctagatgaaaca 45
>RF00886;MIR807;AP008217.1/4397202-4397377 39947:Oryza sativa
Japonica Group
Length = 176
Score = 119 bits (60), Expect = 6e-27
Identities = 82/88 (93%), Gaps = 1/88 (1%)
Strand = Plus / Minus
Query: 1 tgttccat-taggatgaggatgtggcatcctattaatttcgtgcgatggctggtaatagg 59
|||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 132 tgttccatctaggatgaggacgtggcatcatattaatttcgtgcgatggctggtaatagg 73
Query: 60 atgctatgtcctcatcctaggtgaaaca 87
||| |||||||| ||||||||||||||
Sbjct: 72 atgtcatgtcctcgtcctaggtgaaaca 45
>RF00886;MIR807;AP008210.1/24363969-24363794 39947:Oryza sativa
Japonica Group
Length = 176
Score = 117 bits (59), Expect = 2e-26
Identities = 74/79 (93%)
Strand = Plus / Minus
Query: 9 taggatgaggatgtggcatcctattaatttcgtgcgatggctggtaataggatgctatgt 68
||||||| ||| |||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 123 taggatgtggacgtggcatcctattaattttgtgcgatggctggtaataggatgccatgt 64
Query: 69 cctcatcctaggtgaaaca 87
|||| ||||||||||||||
Sbjct: 63 cctcgtcctaggtgaaaca 45
>RF00886;MIR807;AACV01004560.1/65192-65367 39947:Oryza sativa
Japonica Group
Length = 176
Score = 117 bits (59), Expect = 2e-26
Identities = 81/87 (93%), Gaps = 1/87 (1%)
Strand = Plus / Minus
Query: 1 tgttccat-taggatgaggatgtggcatcctattaatttcgtgcgatggctggtaatagg 59
|||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 132 tgttccatctaggatgaggacgtggcatcctattaatttcgtgcgattgctggtaatagg 73
Query: 60 atgctatgtcctcatcctaggtgaaac 86
|||| ||||||| |||||||||||||
Sbjct: 72 atgccatgtccttgtcctaggtgaaac 46
>RF00886;MIR807;AP004730.2/80501-80330 39947:Oryza sativa Japonica
Group
Length = 172
Score = 111 bits (56), Expect = 1e-24
Identities = 71/76 (93%)
Strand = Plus / Minus
Query: 12 gatgaggatgtggcatcctattaatttcgtgcgatggctggtaataggatgctatgtcct 71
|||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||| ||
Sbjct: 116 gatgaggacgtggcatcctattaatttcgtgcgatggctgataataggatgccatgttct 57
Query: 72 catcctaggtgaaaca 87
| ||||||||||||||
Sbjct: 56 cgtcctaggtgaaaca 41
>RF00886;MIR807;ABRL01001415.1/1774-1949 65489:Oryza barthii
Length = 176
Score = 111 bits (56), Expect = 1e-24
Identities = 81/88 (92%), Gaps = 1/88 (1%)
Strand = Plus / Minus
Query: 1 tgttccat-taggatgaggatgtggcatcctattaatttcgtgcgatggctggtaatagg 59
|||||||| ||||||||||| |||||||||||||||||| ||| |||||||| ||||| |
Sbjct: 132 tgttccatataggatgaggacgtggcatcctattaattttgtgtgatggctgttaatacg 73
Query: 60 atgctatgtcctcatcctaggtgaaaca 87
||||||||||||| ||||||||||||||
Sbjct: 72 atgctatgtcctcgtcctaggtgaaaca 45
>RF00886;MIR807;AP008209.1/25850806-25850981 39947:Oryza sativa
Japonica Group
Length = 176
Score = 107 bits (54), Expect = 2e-23
Identities = 72/78 (92%)
Strand = Plus / Minus
Query: 10 aggatgaggatgtggcatcctattaatttcgtgcgatggctggtaataggatgctatgtc 69
|||||||||| || ||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 122 aggatgaggacgtagcatcctattaatttcgtgcgatggctagtaataggatgccatgta 63
Query: 70 ctcatcctaggtgaaaca 87
||||| ||||||||||||
Sbjct: 62 ctcattctaggtgaaaca 45
>RF00886;MIR807;AP005467.3/31891-31716 39947:Oryza sativa Japonica
Group
Length = 176
Score = 103 bits (52), Expect = 4e-22
Identities = 55/56 (98%)
Strand = Plus / Minus
Query: 8 ttaggatgaggatgtggcatcctattaatttcgtgcgatggctggtaataggatgc 63
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 ttaggatgaggacgtggcatcctattaatttcgtgcgatggctggtaataggatgc 69
Score = 46.1 bits (23), Expect = 7e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 53 taataggatgctatgtcctcatcctaggtgaaaca 87
||||||||||| | |||||||||||| ||||||||
Sbjct: 98 taataggatgccacgtcctcatcctaagtgaaaca 132
>RF00886;MIR807;AC150702.2/71785-71606 39947:Oryza sativa Japonica
Group
Length = 180
Score = 99.6 bits (50), Expect = 6e-21
Identities = 53/54 (98%)
Strand = Plus / Minus
Query: 9 taggatgaggatgtggcatcctattaatttcgtgcgatggctggtaataggatg 62
||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 taggatgaggacgtggcatcctattaatttcgtgcgatggctggtaataggatg 70
Score = 46.1 bits (23), Expect = 7e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 53 taataggatgctatgtcctcatcctaggtgaaaca 87
||||||||||| | |||||||||||||||| ||||
Sbjct: 98 taataggatgccacgtcctcatcctaggtggaaca 132
>RF00886;MIR807;AP003614.2/25317-25492 39947:Oryza sativa Japonica
Group
Length = 176
Score = 95.6 bits (48), Expect = 9e-20
Identities = 79/88 (89%), Gaps = 1/88 (1%)
Strand = Plus / Minus
Query: 1 tgttccat-taggatgaggatgtggcatcctattaatttcgtgcgatggctggtaatagg 59
|||||||| ||| ||||||| |||||||| |||||||||| |||||||||||||||||
Sbjct: 132 tgttccatctagaatgaggacgtggcatctcattaatttcgcgcgatggctggtaataga 73
Query: 60 atgctatgtcctcatcctaggtgaaaca 87
|||| |||||||| ||||||||||||||
Sbjct: 72 atgccatgtcctcgtcctaggtgaaaca 45
>RF00886;MIR807;AP008213.1/22343208-22343383 39947:Oryza sativa
Japonica Group
Length = 176
Score = 95.6 bits (48), Expect = 9e-20
Identities = 79/88 (89%), Gaps = 1/88 (1%)
Strand = Plus / Minus
Query: 1 tgttccat-taggatgaggatgtggcatcctattaatttcgtgcgatggctggtaatagg 59
|||||||| ||||||||||| || ||||||||||||||||||| ||| |||| |||||||
Sbjct: 132 tgttccatctaggatgaggacgtagcatcctattaatttcgtgtgatagctgataatagg 73
Query: 60 atgctatgtcctcatcctaggtgaaaca 87
|||| ||| |||| ||||||||||||||
Sbjct: 72 atgccatgacctcgtcctaggtgaaaca 45
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 53 taataggatgctatgtcctcatcctag 79
||||||||||||| |||||||||||||
Sbjct: 98 taataggatgctacgtcctcatcctag 124
>RF00886;MIR807;AP005504.3/98901-98726 39947:Oryza sativa Japonica
Group
Length = 176
Score = 95.6 bits (48), Expect = 9e-20
Identities = 69/76 (90%)
Strand = Plus / Minus
Query: 12 gatgaggatgtggcatcctattaatttcgtgcgatggctggtaataggatgctatgtcct 71
||||||||||| ||||||||||||||||||||||||| |||||||| |||| |||||||
Sbjct: 120 gatgaggatgttgcatcctattaatttcgtgcgatggttggtaatatgatgtcatgtcct 61
Query: 72 catcctaggtgaaaca 87
| ||||| ||||||||
Sbjct: 60 cgtcctatgtgaaaca 45
>RF00886;MIR807;AP004791.3/76245-76420 39947:Oryza sativa Japonica
Group
Length = 176
Score = 93.7 bits (47), Expect = 3e-19
Identities = 59/63 (93%)
Strand = Plus / Minus
Query: 22 tggcatcctattaatttcgtgcgatggctggtaataggatgctatgtcctcatcctaggt 81
|||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||
Sbjct: 110 tggcatcctattaatttcgtgcgatggctggtaatatgatgccatgtccttgtcctaggt 51
Query: 82 gaa 84
|||
Sbjct: 50 gaa 48
>RF00886;MIR807;AP003980.3/21448-21278 39947:Oryza sativa Japonica
Group
Length = 171
Score = 93.7 bits (47), Expect = 3e-19
Identities = 62/67 (92%)
Strand = Plus / Minus
Query: 9 taggatgaggatgtggcatcctattaatttcgtgcgatggctggtaataggatgctatgt 68
||||| ||| || ||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 117 taggacgagaatatggcatcctattaattttgtgcgatggctggtaataggatgccatgt 58
Query: 69 cctcatc 75
|||||||
Sbjct: 57 cctcatc 51
>RF00886;MIR807;AP008209.1/146870-147036 39947:Oryza sativa Japonica
Group
Length = 167
Score = 87.7 bits (44), Expect = 2e-17
Identities = 78/88 (88%), Gaps = 1/88 (1%)
Strand = Plus / Minus
Query: 1 tgttccat-taggatgaggatgtggcatcctattaatttcgtgcgatggctggtaatagg 59
|||||||| ||||||||||| ||||||||||||||||||||||| |||||| |||||| |
Sbjct: 132 tgttccatctaggatgaggacgtggcatcctattaatttcgtgccatggctagtaatatg 73
Query: 60 atgctatgtcctcatcctaggtgaaaca 87
|||| | ||||| |||||| |||||||
Sbjct: 72 atgccacatcctcgtcctagatgaaaca 45
>RF00886;MIR807;AP008218.1/24774402-24774577 39947:Oryza sativa
Japonica Group
Length = 176
Score = 85.7 bits (43), Expect = 8e-17
Identities = 61/67 (91%)
Strand = Plus / Minus
Query: 21 gtggcatcctattaatttcgtgcgatggctggtaataggatgctatgtcctcatcctagg 80
||||||||||||||||||| |||||||||||||||||||||| | ||||| ||||||||
Sbjct: 111 gtggcatcctattaatttcatgcgatggctggtaataggatgtcacgtccttatcctagg 52
Query: 81 tgaaaca 87
|| ||||
Sbjct: 51 tgtaaca 45
>RF00886;MIR807;AACV01002847.1/97461-97359 39947:Oryza sativa
Japonica Group
Length = 103
Score = 85.7 bits (43), Expect = 8e-17
Identities = 52/55 (94%)
Strand = Plus / Minus
Query: 9 taggatgaggatgtggcatcctattaatttcgtgcgatggctggtaataggatgc 63
||||||||||| ||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 86 taggatgaggacgtggcatcctattaatttcatgagatggctggtaataggatgc 32
>RF00886;MIR807;AP003416.4/20580-20388 39947:Oryza sativa Japonica
Group
Length = 193
Score = 85.7 bits (43), Expect = 8e-17
Identities = 64/71 (90%)
Strand = Plus / Minus
Query: 12 gatgaggatgtggcatcctattaatttcgtgcgatggctggtaataggatgctatgtcct 71
|||||||| ||| |||| ||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 116 gatgaggacgtgacatcatattaatttcgtgcgatggctggtaatagaatgccatgtcct 57
Query: 72 catcctaggtg 82
| || ||||||
Sbjct: 56 cgtcttaggtg 46
>RF00886;MIR807;AACV01012009.1/8088-8265 39947:Oryza sativa Japonica
Group
Length = 178
Score = 85.7 bits (43), Expect = 8e-17
Identities = 80/90 (88%), Gaps = 3/90 (3%)
Strand = Plus / Minus
Query: 1 tgttccat-taggatgaggatgtggcat--cctattaatttcgtgcgatggctggtaata 57
|||||||| |||||||| |||||||||| |||||||||||||||| |||||||||||||
Sbjct: 134 tgttccatctaggatgatgatgtggcatatcctattaatttcgtgcaatggctggtaata 75
Query: 58 ggatgctatgtcctcatcctaggtgaaaca 87
|||||| | |||||| ||||| || |||||
Sbjct: 74 ggatgccacgtcctcgtcctatgtaaaaca 45
>RF00886;MIR807;AC130728.2/139649-139806 39947:Oryza sativa Japonica
Group
Length = 158
Score = 83.8 bits (42), Expect = 3e-16
Identities = 42/42 (100%)
Strand = Plus / Minus
Query: 22 tggcatcctattaatttcgtgcgatggctggtaataggatgc 63
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 tggcatcctattaatttcgtgcgatggctggtaataggatgc 69
>RF00886;MIR807;AP008217.1/10470098-10469923 39947:Oryza sativa
Japonica Group
Length = 176
Score = 79.8 bits (40), Expect = 5e-15
Identities = 77/88 (87%), Gaps = 1/88 (1%)
Strand = Plus / Minus
Query: 1 tgttccat-taggatgaggatgtggcatcctattaatttcgtgcgatggctggtaatagg 59
|||||||| ||||||||| | |||| ||||||||||||||||| ||||||| |||||| |
Sbjct: 132 tgttccatctaggatgagaacgtggtatcctattaatttcgtgtgatggctagtaatatg 73
Query: 60 atgctatgtcctcatcctaggtgaaaca 87
|||| | ||||| ||||||||||||||
Sbjct: 72 atgccacatcctcgtcctaggtgaaaca 45
>RF00886;MIR807;AACV01002367.1/4813-4988 39947:Oryza sativa Japonica
Group
Length = 176
Score = 79.8 bits (40), Expect = 5e-15
Identities = 77/88 (87%), Gaps = 1/88 (1%)
Strand = Plus / Minus
Query: 1 tgttccat-taggatgaggatgtggcatcctattaatttcgtgcgatggctggtaatagg 59
|||||||| ||||||| ||| |||||||||| ||||||| || |||||||||||||| |
Sbjct: 132 tgttccatctaggatggggacgtggcatcctgttaattttgtctgatggctggtaatatg 73
Query: 60 atgctatgtcctcatcctaggtgaaaca 87
|||| |||||||| ||||| ||||||||
Sbjct: 72 atgccatgtcctcgtcctatgtgaaaca 45
>RF00886;MIR807;AP008211.1/6956627-6956452 39947:Oryza sativa
Japonica Group
Length = 176
Score = 79.8 bits (40), Expect = 5e-15
Identities = 58/64 (90%)
Strand = Plus / Minus
Query: 9 taggatgaggatgtggcatcctattaatttcgtgcgatggctggtaataggatgctatgt 68
||||||||| || ||||||||||||||||||||| |||||||||||||| ||||| | ||
Sbjct: 123 taggatgagaatatggcatcctattaatttcgtgtgatggctggtaataagatgccacgt 64
Query: 69 cctc 72
||||
Sbjct: 63 cctc 60
>RF00886;MIR807;AP003418.2/70741-70597 39947:Oryza sativa Japonica
Group
Length = 145
Score = 73.8 bits (37), Expect = 3e-13
Identities = 37/37 (100%)
Strand = Plus / Minus
Query: 22 tggcatcctattaatttcgtgcgatggctggtaatag 58
|||||||||||||||||||||||||||||||||||||
Sbjct: 79 tggcatcctattaatttcgtgcgatggctggtaatag 43
>RF00886;MIR807;AP008209.1/22897614-22897440 39947:Oryza sativa
Japonica Group
Length = 175
Score = 73.8 bits (37), Expect = 3e-13
Identities = 61/69 (88%)
Strand = Plus / Minus
Query: 9 taggatgaggatgtggcatcctattaatttcgtgcgatggctggtaataggatgctatgt 68
|||||| |||| ||| ||||||||||||||||||||||||| ||||||| |||| ||||
Sbjct: 122 taggataaggacgtgacatcctattaatttcgtgcgatggcgggtaatatgatgtcatgt 63
Query: 69 cctcatcct 77
|||| ||||
Sbjct: 62 cctcgtcct 54
>RF00886;MIR807;AP008218.1/26445543-26445717 39947:Oryza sativa
Japonica Group
Length = 175
Score = 71.9 bits (36), Expect = 1e-12
Identities = 77/88 (87%), Gaps = 2/88 (2%)
Strand = Plus / Minus
Query: 1 tgttccat-taggatgaggatgtggcatcctattaatttcgtgcgatggctggtaatagg 59
|||||||| ||||| ||| | ||| |||||||||||||||||| ||||||||| ||||
Sbjct: 131 tgttccatctaggaggagaacgtgacatcctattaatttcgtgtaatggctggtt-tagg 73
Query: 60 atgctatgtcctcatcctaggtgaaaca 87
|||| |||||||| ||||||||||||||
Sbjct: 72 atgccatgtcctcgtcctaggtgaaaca 45
>RF00886;MIR807;AP003723.3/26441-26273 39947:Oryza sativa Japonica
Group
Length = 169
Score = 71.9 bits (36), Expect = 1e-12
Identities = 48/52 (92%)
Strand = Plus / Minus
Query: 36 tttcgtgcgatggctggtaataggatgctatgtcctcatcctaggtgaaaca 87
||||||||||||||||||||||||||| |||||||| || |||||||||||
Sbjct: 96 tttcgtgcgatggctggtaataggatgtcatgtcctcgtcgtaggtgaaaca 45
>RF00886;MIR807;AP008210.1/25407640-25407814 39947:Oryza sativa
Japonica Group
Length = 175
Score = 71.9 bits (36), Expect = 1e-12
Identities = 66/76 (86%)
Strand = Plus / Minus
Query: 12 gatgaggatgtggcatcctattaatttcgtgcgatggctggtaataggatgctatgtcct 71
||||| || ||||||||||||||||||| || ||||||| |||||| ||||| |||| ||
Sbjct: 120 gatgatgacgtggcatcctattaatttcatgggatggctagtaataagatgccatgttct 61
Query: 72 catcctaggtgaaaca 87
| |||||| |||||||
Sbjct: 60 cgtcctagttgaaaca 45
>RF00886;MIR807;AL606630.3/69632-69455 39947:Oryza sativa Japonica
Group
Length = 178
Score = 71.9 bits (36), Expect = 1e-12
Identities = 54/60 (90%)
Strand = Plus / Minus
Query: 26 atcctattaatttcgtgcgatggctggtaataggatgctatgtcctcatcctaggtgaaa 85
||||||||||||||||| ||||||||||||||||||| ||||||| ||||| ||||||
Sbjct: 106 atcctattaatttcgtgagatggctggtaataggatgtcatgtccttgtcctatgtgaaa 47
>RF00886;MIR807;AACV01024250.1/1370-1289 39947:Oryza sativa
Japonica Group
Length = 82
Score = 69.9 bits (35), Expect = 5e-12
Identities = 53/59 (89%)
Strand = Plus / Minus
Query: 11 ggatgaggatgtggcatcctattaatttcgtgcgatggctggtaataggatgctatgtc 69
||||||||| |||||||||||||||||||||| ||||||| ||||| ||||| |||||
Sbjct: 74 ggatgaggacgtggcatcctattaatttcgtgtgatggctagtaatgtgatgccatgtc 16
>RF00886;MIR807;AP008211.1/1073954-1073779 39947:Oryza sativa
Japonica Group
Length = 176
Score = 69.9 bits (35), Expect = 5e-12
Identities = 50/55 (90%)
Strand = Plus / Minus
Query: 9 taggatgaggatgtggcatcctattaatttcgtgcgatggctggtaataggatgc 63
||||||||| | ||||||||||||||||||||||| ||| ||| |||||||||||
Sbjct: 123 taggatgagaacgtggcatcctattaatttcgtgcaatgactgataataggatgc 69
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 ttaggatgaggatgtggcatcctatta 34
|||||| ||||||||||||||||||||
Sbjct: 53 ttaggacgaggatgtggcatcctatta 79
>RF00886;MIR807;AL731891.2/51910-51737 4530:Oryza sativa (rice)
Length = 174
Score = 65.9 bits (33), Expect = 8e-11
Identities = 36/37 (97%)
Strand = Plus / Minus
Query: 21 gtggcatcctattaatttcgtgcgatggctggtaata 57
||||||||||||||||||||||||||||||| |||||
Sbjct: 109 gtggcatcctattaatttcgtgcgatggctgataata 73
>RF00886;MIR807;CR855159.1/38055-38229 4530:Oryza sativa (rice)
Length = 175
Score = 48.1 bits (24), Expect = 2e-05
Identities = 46/52 (88%), Gaps = 1/52 (1%)
Strand = Plus / Minus
Query: 12 gatgaggatgtggcatcctattaatttcgtgcgatggctggtaataggatgc 63
|||||||| |||||||||| || |||| |||| |||||| ||||||||||||
Sbjct: 119 gatgaggacgtggcatcct-ttgattttgtgcaatggcttgtaataggatgc 69
