miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>50338_osa-miRf11123-akr:pmrd
Length = 86
Score = 99.6 bits (50), Expect = 4e-22
Identities = 56/58 (96%)
Strand = Plus / Plus
Query: 1 acccgtaacttcctggtaaggaacaccggaactttcggtctgccaggcccggaacttc 58
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 acccggaacttcctggtaaggaacaccggaacttccggtctgccaggcccggaacttc 58
Score = 85.7 bits (43), Expect = 6e-18
Identities = 52/55 (94%)
Strand = Plus / Plus
Query: 49 ccggaacttctggtttgccaggcccggaacttccggtgttctaggacaggaactt 103
|||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 26 ccggaacttccggtctgccaggcccggaacttccggtgttttaggacaggaactt 80
>49948_osa-miRf10733-akr:pmrd
Length = 86
Score = 89.7 bits (45), Expect = 4e-19
Identities = 57/61 (93%)
Strand = Plus / Plus
Query: 49 ccggaacttctggtttgccaggcccggaacttccggtgttctaggacaggaactttcggg 108
||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 26 ccggaacttctggccttccaggcccggaacttccggtgttctaggacaggaacttccggg 85
Query: 109 t 109
|
Sbjct: 86 t 86
Score = 71.9 bits (36), Expect = 9e-14
Identities = 72/84 (85%)
Strand = Plus / Plus
Query: 1 acccgtaacttcctggtaaggaacaccggaactttcggtctgccaggcccggaacttctg 60
||||| |||||||||||||||||| ||||||||| || || |||||||||||||||| |
Sbjct: 1 acccggaacttcctggtaaggaactccggaacttctggccttccaggcccggaacttccg 60
Query: 61 gtttgccaggcccggaacttccgg 84
|| | | ||| | |||||||||||
Sbjct: 61 gtgttctaggacaggaacttccgg 84
>49601_osa-miRf10386-akr:pmrd
Length = 86
Score = 83.8 bits (42), Expect = 2e-17
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 1 acccgtaacttcctggtaaggaacaccggaactttcggtctgccaggcccggaacttc 58
||||| |||||||||||||||||||| ||||||| ||||||||||||||| |||||||
Sbjct: 1 acccggaacttcctggtaaggaacactggaacttccggtctgccaggcccagaacttc 58
Score = 77.8 bits (39), Expect = 1e-15
Identities = 54/59 (91%)
Strand = Plus / Plus
Query: 51 ggaacttctggtttgccaggcccggaacttccggtgttctaggacaggaactttcgggt 109
|||||||| ||| |||||||||| |||||||||||||| |||||||||||||| |||||
Sbjct: 28 ggaacttccggtctgccaggcccagaacttccggtgttgtaggacaggaacttccgggt 86
>49491_osa-miRf10276-akr:pmrd
Length = 86
Score = 81.8 bits (41), Expect = 1e-16
Identities = 56/61 (91%)
Strand = Plus / Plus
Query: 49 ccggaacttctggtttgccaggcccggaacttccggtgttctaggacaggaactttcggg 108
|||||||||| || || ||||||||| |||||||||||||||||||||||||||| ||||
Sbjct: 26 ccggaacttccggctttccaggcccgaaacttccggtgttctaggacaggaacttccggg 85
Query: 109 t 109
|
Sbjct: 86 t 86
Score = 63.9 bits (32), Expect = 2e-11
Identities = 71/84 (84%)
Strand = Plus / Plus
Query: 1 acccgtaacttcctggtaaggaacaccggaactttcggtctgccaggcccggaacttctg 60
||||| |||||||||||||||||| ||||||||| ||| | ||||||||| |||||| |
Sbjct: 1 acccggaacttcctggtaaggaactccggaacttccggctttccaggcccgaaacttccg 60
Query: 61 gtttgccaggcccggaacttccgg 84
|| | | ||| | |||||||||||
Sbjct: 61 gtgttctaggacaggaacttccgg 84
>49490_osa-miRf10275-akr:pmrd
Length = 86
Score = 79.8 bits (40), Expect = 4e-16
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 66 ccaggcccggaacttccggtgttctaggacaggaactttcgggt 109
|||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 43 ccaggcccggaacttccggtgttctaggacaggaacttccgggt 86
Score = 67.9 bits (34), Expect = 1e-12
Identities = 67/78 (85%)
Strand = Plus / Plus
Query: 7 aacttcctggtaaggaacaccggaactttcggtctgccaggcccggaacttctggtttgc 66
|||||||||||||||||| ||||||||| || || |||||||||||||||| ||| | |
Sbjct: 7 aacttcctggtaaggaactccggaacttccgaccttccaggcccggaacttccggtgttc 66
Query: 67 caggcccggaacttccgg 84
||| | |||||||||||
Sbjct: 67 taggacaggaacttccgg 84
>50817_osa-miRf11602-akr:pmrd
Length = 86
Score = 71.9 bits (36), Expect = 9e-14
Identities = 72/84 (85%)
Strand = Plus / Plus
Query: 1 acccgtaacttcctggtaaggaacaccggaactttcggtctgccaggcccggaacttctg 60
||||| ||||||||||||||||||||| ||| || |||||||||| | |||||||||| |
Sbjct: 1 acccgaaacttcctggtaaggaacaccagaatttccggtctgccatgtccggaacttccg 60
Query: 61 gtttgccaggcccggaacttccgg 84
|| | | ||| | |||||||||||
Sbjct: 61 gtgttctaggacaggaacttccgg 84
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 72 ccggaacttccggtgttctaggacaggaactttcgggt 109
|||||||||||||||||||||||||||||||| |||||
Sbjct: 49 ccggaacttccggtgttctaggacaggaacttccgggt 86
>49608_osa-miRf10393-akr:pmrd
Length = 90
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 72 ccggaacttccggtgttctaggacaggaactt 103
||||||||||||||||||| | || |||||||
Sbjct: 38 ccggaacttccggtgttcttgtaccggaactt 7
