miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01234;SNORA47;CAAA01163729.1/4429-4566 10090:Mus musculus (house
mouse)
Length = 138
Score = 157 bits (79), Expect = 3e-38
Identities = 82/83 (98%)
Strand = Plus / Plus
Query: 23 tggaggactgagaaggtggagcagttctgtaccgtgctgccttccattggttaagacctc 82
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggaggactgagaaggtggagcagttctgtaccgtgctgccttccattggttaagacctc 60
Query: 83 caacagtaaagggctgcccggcc 105
|||||||||||||||| ||||||
Sbjct: 61 caacagtaaagggctggccggcc 83
>RF01234;SNORA47;AABR04017511.1/12614-12751 10116:Rattus
norvegicus (Norway rat)
Length = 138
Score = 117 bits (59), Expect = 3e-26
Identities = 72/75 (96%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 23 tggaggactgagaaggtggagcagttctgtaccgtgctgccttccattggttaagacctc 82
|||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1 tggaggacagagaaggtggagcagttca-taccgtgctgccttccattggttaagacctc 59
Query: 83 caacagtaaagggct 97
|||||||||||||||
Sbjct: 60 caacagtaaagggct 74
>RF01234;SNORA47;ABDC01238968.1/714-577 30608:Microcebus murinus
(gray mouse lemur)
Length = 138
Score = 101 bits (51), Expect = 2e-21
Identities = 72/79 (91%)
Strand = Plus / Plus
Query: 23 tggaggactgagaaggtggagcagttctgtaccgtgctgccttccattggttaagacctc 82
|||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||
Sbjct: 1 tggaggactgagaaggtgaggcagttctgtactgtgctgccttccactggttaagacctc 60
Query: 83 caacagtaaagggctgccc 101
||| ||| ||| |||||||
Sbjct: 61 caaaagtgaagagctgccc 79
>RF01234;SNORA47;AAPE01213470.1/5012-5149 59463:Myotis lucifugus
(little brown bat)
Length = 138
Score = 93.7 bits (47), Expect = 4e-19
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 24 ggaggactgagaaggtggagcagttctgtaccgtgctgccttccattggttaagacctcc 83
|||||||||||||||||| ||||||||||||| ||||||||| || ||||||||||||||
Sbjct: 2 ggaggactgagaaggtggggcagttctgtaccatgctgcctttcactggttaagacctcc 61
Query: 84 aacagtaaagg 94
|| || |||||
Sbjct: 62 aagagcaaagg 72
>RF01234;SNORA47;AAQR01593583.1/819-956 30611:Otolemur garnettii
(small-eared galago)
Length = 138
Score = 85.7 bits (43), Expect = 1e-16
Identities = 70/79 (88%)
Strand = Plus / Plus
Query: 23 tggaggactgagaaggtggagcagttctgtaccgtgctgccttccattggttaagacctc 82
|||||||||||||| ||| ||||||||||||| |||||||||||| |||||||||||||
Sbjct: 1 tggaggactgagaaagtgaggcagttctgtaccatgctgccttccactggttaagacctc 60
Query: 83 caacagtaaagggctgccc 101
| | ||| || ||||||||
Sbjct: 61 cgaaagtgaacggctgccc 79
>RF01234;SNORA47;AAFC03068530.1/722-859 9913:Bos taurus (cattle)
Length = 138
Score = 79.8 bits (40), Expect = 6e-15
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 24 ggaggactgagaaggtggagcagttctgtaccgtgctgccttccattggttaagacctcc 83
||||||||||||||||| ||||||||| ||| |||||||||||| ||||||||||||||
Sbjct: 2 ggaggactgagaaggtgaggcagttctgaaccatgctgccttccactggttaagacctcc 61
>RF01234;SNORA47;AAPY01231828.1/609-746 37347:Tupaia belangeri
(northern tree shrew)
Length = 138
Score = 77.8 bits (39), Expect = 3e-14
Identities = 69/79 (87%)
Strand = Plus / Plus
Query: 23 tggaggactgagaaggtggagcagttctgtaccgtgctgccttccattggttaagacctc 82
|||||||||||||||||| ||||| |||| || |||||||||||| |||||| ||||||
Sbjct: 1 tggaggactgagaaggtgaggcagtcctgtgccatgctgccttccactggttatgacctc 60
Query: 83 caacagtaaagggctgccc 101
| | || ||||||||||||
Sbjct: 61 cgaaagcaaagggctgccc 79
>RF01234;SNORA47;AAWR02003118.1/1523-1660 9796:Equus caballus
(horse)
Length = 138
Score = 75.8 bits (38), Expect = 1e-13
Identities = 68/78 (87%)
Strand = Plus / Plus
Query: 23 tggaggactgagaaggtggagcagttctgtaccgtgctgccttccattggttaagacctc 82
|||||||||||||||||| ||||| |||||||||||||||||| | ||||||||||||
Sbjct: 1 tggaggactgagaaggtgaggcagtcctgtaccgtgctgccttctaccggttaagacctc 60
Query: 83 caacagtaaagggctgcc 100
| | ||| |||| |||||
Sbjct: 61 cgagagtgaaggcctgcc 78
>RF01234;SNORA47;ABRQ01347119.1/533-671 9813:Procavia capensis
(cape rock hyrax)
Length = 139
Score = 73.8 bits (37), Expect = 4e-13
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 23 tggaggactgagaaggtggagcagttctgtaccgtgctgccttccattggttaagacctc 82
|||||||||||||||||| ||||| ||||||||||||||| | || |||||||||||||
Sbjct: 1 tggaggactgagaaggtgaggcagtcctgtaccgtgctgccgtgcactggttaagacctc 60
Query: 83 c 83
|
Sbjct: 61 c 61
>RF01234;SNORA47;AANU01255330.1/14899-14762 9544:Macaca mulatta
(rhesus monkey)
Length = 138
Score = 61.9 bits (31), Expect = 2e-09
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 23 tggaggactgagaaggtggagcagttctgtaccgtgctgccttccattggttaagacctc 82
|||||||||||||||||| ||||||||| || |||||||||||| ||||| ||||||
Sbjct: 1 tggaggactgagaaggtgaggcagttctgccccatgctgccttccaccggttacgacctc 60
Query: 83 caa 85
|||
Sbjct: 61 caa 63
>RF01234;SNORA47;ABRT010436891.1/3110-3246 9478:Tarsius syrichta
(Philippine tarsier)
Length = 137
Score = 58.0 bits (29), Expect = 2e-08
Identities = 69/81 (85%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 23 tggaggactgagaaggtggagcagttctgtaccgtgctgccttccattggttaagacctc 82
|||||||||||||||||| |||| ||| || |||||||||||| ||||||||||||
Sbjct: 1 tggaggactgagaaggtgaggcaggcctgc-ccatgctgccttccaccggttaagacctc 59
Query: 83 caacagtaaagggctgcccgg 103
||| || |||||||||||||
Sbjct: 60 caagagagaagggctgcccgg 80
>RF01234;SNORA47;AALT01067225.1/502-637 42254:Sorex araneus
(European shrew)
Length = 136
Score = 52.0 bits (26), Expect = 1e-06
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 30 ctgagaaggtggagcagttctgtaccgtgctgccttccattggttaagacctcc 83
||||||||||| |||| || ||||| |||||| || |||||||||||||||||
Sbjct: 7 ctgagaaggtgaggcagctcagtaccatgctgcttttcattggttaagacctcc 60
>RF01234;SNORA47;AAGV020620540.1/2645-2509 9361:Dasypus
novemcinctus (nine-banded armadillo)
Length = 137
Score = 50.1 bits (25), Expect = 6e-06
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 23 tggaggactgagaaggtggagcagttctgtaccgtgctgccttccattggttaagacctc 82
||||||||||| ||| || |||| |||||||| |||||||||||| | ||||| |||||
Sbjct: 1 tggaggactgaaaagatgaggcagatctgtaccatgctgccttccactagttaacacctc 60
Query: 83 c 83
|
Sbjct: 61 c 61
>RF01234;SNORA47;AAIY01795198.1/543-688 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 146
Score = 50.1 bits (25), Expect = 6e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 23 tggaggactgagaaggtggagcagttctgtaccgtgctgcc 63
|||||||||||||||||| |||| |||||||| |||||||
Sbjct: 1 tggaggactgagaaggtgaggcagctctgtaccatgctgcc 41
>RF01234;SNORA47;AAIY01539146.1/6318-6455 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 138
Score = 50.1 bits (25), Expect = 6e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 23 tggaggactgagaaggtggagcagttctgtaccgtgctgcc 63
|||||||||||||||||| |||| |||||||| |||||||
Sbjct: 1 tggaggactgagaaggtgaggcagctctgtaccatgctgcc 41
>RF01234;SNORA47;AAQQ01634086.1/1372-1509 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 138
Score = 46.1 bits (23), Expect = 9e-05
Identities = 65/79 (82%)
Strand = Plus / Plus
Query: 23 tggaggactgagaaggtggagcagttctgtaccgtgctgccttccattggttaagacctc 82
|||||||||||||||||| ||||| |||| | |||| ||| | |||||||||||||
Sbjct: 1 tggaggactgagaaggtgaggcagtctcataccatactgctttctactggttaagacctc 60
Query: 83 caacagtaaagggctgccc 101
|||||| ||||| |||||
Sbjct: 61 caacagcgaagggttgccc 79
