miRNEST 2.0, an integrative microRNA resource :: BLAST
>33024_rno-mir-3074:mirbase
Length = 117
Score = 141 bits (71), Expect = 1e-34
Identities = 105/115 (91%), Gaps = 1/115 (0%)
Strand = Plus / Minus
Query: 1 ctgcccagctgtgaggggacccgttctccggtgcctactgagctgatatcaggtgattat 60
|||||||||||||| ||||||| ||||||||||||||||||||||||||| | | ||
Sbjct: 114 ctgcccagctgtgattggacccgccctccggtgcctactgagctgatatcagttc-tcat 56
Query: 61 ttgagacactggctcagttcagcaggaacaggagtcgagcccttgagcaaaaagc 115
|| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55 ttcacacactggctcagttcagcaggaacaggagtcgagcccttgagcaaaaagc 1
>26413_tgu-mir-24:mirbase
Length = 132
Score = 105 bits (53), Expect = 7e-24
Identities = 78/85 (91%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 17 ggacccgttctccggtgcctactgagctgatatcaggtgattatttgagacactggctca 76
|||||||| ||||||||||||||||||||||||||| | | |||| | |||||||||||
Sbjct: 49 ggacccgtcctccggtgcctactgagctgatatcagttc-tgattttacacactggctca 107
Query: 77 gttcagcaggaacaggagtcgagcc 101
|||||||||||||||||||||||||
Sbjct: 108 gttcagcaggaacaggagtcgagcc 132
>32511_mmu-mir-3074-1:mirbase
Length = 85
Score = 99.6 bits (50), Expect = 4e-22
Identities = 78/86 (90%), Gaps = 1/86 (1%)
Strand = Plus / Minus
Query: 17 ggacccgttctccggtgcctactgagctgatatcaggtgattatttgagacactggctca 76
||||||| ||||||||||||||||||||||||||| | | |||| | |||||||||||
Sbjct: 85 ggacccgccctccggtgcctactgagctgatatcagttc-tcatttcacacactggctca 27
Query: 77 gttcagcaggaacaggagtcgagccc 102
||||||||||||||||||||||||||
Sbjct: 26 gttcagcaggaacaggagtcgagccc 1
>32512_mmu-mir-3074-1:mirbase
Length = 85
Score = 99.6 bits (50), Expect = 4e-22
Identities = 78/86 (90%), Gaps = 1/86 (1%)
Strand = Plus / Minus
Query: 17 ggacccgttctccggtgcctactgagctgatatcaggtgattatttgagacactggctca 76
||||||| ||||||||||||||||||||||||||| | | |||| | |||||||||||
Sbjct: 85 ggacccgccctccggtgcctactgagctgatatcagttc-tcatttcacacactggctca 27
Query: 77 gttcagcaggaacaggagtcgagccc 102
||||||||||||||||||||||||||
Sbjct: 26 gttcagcaggaacaggagtcgagccc 1
>29230_hsa-mir-3074:mirbase
Length = 81
Score = 93.7 bits (47), Expect = 3e-20
Identities = 69/75 (92%), Gaps = 1/75 (1%)
Strand = Plus / Minus
Query: 26 ctccggtgcctactgagctgatatcaggtgattatttgagacactggctcagttcagcag 85
||||||||||||||||||||||||||| | | |||| | ||||||||||||||||||||
Sbjct: 74 ctccggtgcctactgagctgatatcagttc-tcattttacacactggctcagttcagcag 16
Query: 86 gaacaggagtcgagc 100
|||||||||||||||
Sbjct: 15 gaacaggagtcgagc 1
>29231_hsa-mir-3074:mirbase
Length = 81
Score = 93.7 bits (47), Expect = 3e-20
Identities = 69/75 (92%), Gaps = 1/75 (1%)
Strand = Plus / Minus
Query: 26 ctccggtgcctactgagctgatatcaggtgattatttgagacactggctcagttcagcag 85
||||||||||||||||||||||||||| | | |||| | ||||||||||||||||||||
Sbjct: 74 ctccggtgcctactgagctgatatcagttc-tcattttacacactggctcagttcagcag 16
Query: 86 gaacaggagtcgagc 100
|||||||||||||||
Sbjct: 15 gaacaggagtcgagc 1
>33929_ssc-mir-24-2:mirbase
Length = 80
Score = 89.7 bits (45), Expect = 4e-19
Identities = 67/73 (91%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 26 ctccggtgcctactgagctgatatcaggtgattatttgagacactggctcagttcagcag 85
||||||||||||||||||||||||||| | | |||| | ||||||||||||||||||||
Sbjct: 9 ctccggtgcctactgagctgatatcagttc-tcattttacacactggctcagttcagcag 67
Query: 86 gaacaggagtcga 98
|||||||||||||
Sbjct: 68 gaacaggagtcga 80
>26962_eca-mir-24-2:mirbase
Length = 68
Score = 81.8 bits (41), Expect = 1e-16
Identities = 63/69 (91%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 26 ctccggtgcctactgagctgatatcaggtgattatttgagacactggctcagttcagcag 85
||||||||||||||||||||||||||| | | |||| | ||||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatcagttc-tcattttacacactggctcagttcagcag 59
Query: 86 gaacaggag 94
|||||||||
Sbjct: 60 gaacaggag 68
>27667_mml-mir-24-1:mirbase
Length = 68
Score = 81.8 bits (41), Expect = 1e-16
Identities = 63/69 (91%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 26 ctccggtgcctactgagctgatatcaggtgattatttgagacactggctcagttcagcag 85
||||||||||||||||||||||||||| | | |||| | ||||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatcagttc-tcattttacacactggctcagttcagcag 59
Query: 86 gaacaggag 94
|||||||||
Sbjct: 60 gaacaggag 68
>28183_mne-mir-24-1:mirbase
Length = 68
Score = 81.8 bits (41), Expect = 1e-16
Identities = 63/69 (91%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 26 ctccggtgcctactgagctgatatcaggtgattatttgagacactggctcagttcagcag 85
||||||||||||||||||||||||||| | | |||| | ||||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatcagttc-tcattttacacactggctcagttcagcag 59
Query: 86 gaacaggag 94
|||||||||
Sbjct: 60 gaacaggag 68
>28377_hsa-mir-24-1:mirbase
Length = 68
Score = 81.8 bits (41), Expect = 1e-16
Identities = 63/69 (91%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 26 ctccggtgcctactgagctgatatcaggtgattatttgagacactggctcagttcagcag 85
||||||||||||||||||||||||||| | | |||| | ||||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatcagttc-tcattttacacactggctcagttcagcag 59
Query: 86 gaacaggag 94
|||||||||
Sbjct: 60 gaacaggag 68
>30056_ppa-mir-24-1:mirbase
Length = 68
Score = 81.8 bits (41), Expect = 1e-16
Identities = 63/69 (91%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 26 ctccggtgcctactgagctgatatcaggtgattatttgagacactggctcagttcagcag 85
||||||||||||||||||||||||||| | | |||| | ||||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatcagttc-tcattttacacactggctcagttcagcag 59
Query: 86 gaacaggag 94
|||||||||
Sbjct: 60 gaacaggag 68
>30768_ppy-mir-24-1:mirbase
Length = 68
Score = 81.8 bits (41), Expect = 1e-16
Identities = 63/69 (91%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 26 ctccggtgcctactgagctgatatcaggtgattatttgagacactggctcagttcagcag 85
||||||||||||||||||||||||||| | | |||| | ||||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatcagttc-tcattttacacactggctcagttcagcag 59
Query: 86 gaacaggag 94
|||||||||
Sbjct: 60 gaacaggag 68
>31791_mmu-mir-24-1:mirbase
Length = 68
Score = 81.8 bits (41), Expect = 1e-16
Identities = 63/69 (91%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 26 ctccggtgcctactgagctgatatcaggtgattatttgagacactggctcagttcagcag 85
||||||||||||||||||||||||||| | | |||| | ||||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatcagttc-tcatttcacacactggctcagttcagcag 59
Query: 86 gaacaggag 94
|||||||||
Sbjct: 60 gaacaggag 68
>32675_rno-mir-24-1:mirbase
Length = 68
Score = 81.8 bits (41), Expect = 1e-16
Identities = 63/69 (91%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 26 ctccggtgcctactgagctgatatcaggtgattatttgagacactggctcagttcagcag 85
||||||||||||||||||||||||||| | | |||| | ||||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatcagttc-tcatttcacacactggctcagttcagcag 59
Query: 86 gaacaggag 94
|||||||||
Sbjct: 60 gaacaggag 68
>33147_bta-mir-24-1:mirbase
Length = 68
Score = 81.8 bits (41), Expect = 1e-16
Identities = 63/69 (91%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 26 ctccggtgcctactgagctgatatcaggtgattatttgagacactggctcagttcagcag 85
||||||||||||||||||||||||||| | | |||| | ||||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatcagttc-tcattttacacactggctcagttcagcag 59
Query: 86 gaacaggag 94
|||||||||
Sbjct: 60 gaacaggag 68
>30163_ptr-mir-24-1:mirbase
Length = 67
Score = 79.8 bits (40), Expect = 4e-16
Identities = 62/68 (91%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 27 tccggtgcctactgagctgatatcaggtgattatttgagacactggctcagttcagcagg 86
|||||||||||||||||||||||||| | | |||| | |||||||||||||||||||||
Sbjct: 1 tccggtgcctactgagctgatatcagttc-tcattttacacactggctcagttcagcagg 59
Query: 87 aacaggag 94
||||||||
Sbjct: 60 aacaggag 67
>25908_gga-mir-24:mirbase
Length = 68
Score = 73.8 bits (37), Expect = 3e-14
Identities = 62/69 (89%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 26 ctccggtgcctactgagctgatatcaggtgattatttgagacactggctcagttcagcag 85
|||||||||||||||||||||||||| || | |||| | | ||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatca-gttctgattttacatactggctcagttcagcag 59
Query: 86 gaacaggag 94
|||||||||
Sbjct: 60 gaacaggag 68
>25716_xtr-mir-24a:mirbase
Length = 67
Score = 65.9 bits (33), Expect = 6e-12
Identities = 57/64 (89%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 31 gtgcctactgagctgatatcaggtgattatttgagacactggctcagttcagcaggaaca 90
||||||||||| |||||||||| | ||||| | |||||||||||||||||||||||||
Sbjct: 6 gtgcctactgaactgatatcagttc--tatttcacacactggctcagttcagcaggaaca 63
Query: 91 ggag 94
||||
Sbjct: 64 ggag 67
>25717_xtr-mir-24a:mirbase
Length = 67
Score = 65.9 bits (33), Expect = 6e-12
Identities = 57/64 (89%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 31 gtgcctactgagctgatatcaggtgattatttgagacactggctcagttcagcaggaaca 90
||||||||||| |||||||||| | ||||| | |||||||||||||||||||||||||
Sbjct: 6 gtgcctactgaactgatatcagttc--tatttcacacactggctcagttcagcaggaaca 63
Query: 91 ggag 94
||||
Sbjct: 64 ggag 67
>31792_mmu-mir-24-2:mirbase
Length = 107
Score = 63.9 bits (32), Expect = 2e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 67 cactggctcagttcagcaggaacaggagtcgagccc 102
|||||||||||||||||||||||||||||| |||||
Sbjct: 58 cactggctcagttcagcaggaacaggagtccagccc 93
>32513_mmu-mir-3074-2:mirbase
Length = 83
Score = 63.9 bits (32), Expect = 2e-11
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 67 cactggctcagttcagcaggaacaggagtcgagccc 102
|||||||||||||||||||||||||||||| |||||
Sbjct: 36 cactggctcagttcagcaggaacaggagtccagccc 1
>32514_mmu-mir-3074-2:mirbase
Length = 83
Score = 63.9 bits (32), Expect = 2e-11
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 67 cactggctcagttcagcaggaacaggagtcgagccc 102
|||||||||||||||||||||||||||||| |||||
Sbjct: 36 cactggctcagttcagcaggaacaggagtccagccc 1
>32676_rno-mir-24-2:mirbase
Length = 108
Score = 63.9 bits (32), Expect = 2e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 67 cactggctcagttcagcaggaacaggagtcgagccc 102
|||||||||||||||||||||||||||||| |||||
Sbjct: 58 cactggctcagttcagcaggaacaggagtccagccc 93
>26639_cfa-mir-24-1:mirbase
Length = 62
Score = 61.9 bits (31), Expect = 1e-10
Identities = 56/63 (88%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 30 ggtgcctactgagctgatatcaggtgattatttgagacactggctcagttcagcaggaac 89
||||||||||||||||||||||| | | ||| | ||||||||||||||||||||||||
Sbjct: 1 ggtgcctactgagctgatatcagttc-tcattgtacacactggctcagttcagcaggaac 59
Query: 90 agg 92
|||
Sbjct: 60 agg 62
>31442_oan-mir-24:mirbase
Length = 84
Score = 61.9 bits (31), Expect = 1e-10
Identities = 61/70 (87%), Gaps = 2/70 (2%)
Strand = Plus / Plus
Query: 26 ctccggtgcctactgagctgatatcaggtgattatttgagacactggctcagttcagcag 85
|||| |||||||||||||||||||||| | | |||| |||||||||||||||||||
Sbjct: 10 ctccagtgcctactgagctgatatcagttc--tcgttgacccactggctcagttcagcag 67
Query: 86 gaacaggagt 95
||||||||||
Sbjct: 68 gaacaggagt 77
>34230_dre-mir-24-3:mirbase
Length = 142
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 66 acactggctcagttcagcaggaacaggagtc 96
|||||||||||||||||||||||||||||||
Sbjct: 76 acactggctcagttcagcaggaacaggagtc 106
>34709_tni-mir-24-1:mirbase
Length = 70
Score = 60.0 bits (30), Expect = 4e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 67 cactggctcagttcagcaggaacaggagtc 96
||||||||||||||||||||||||||||||
Sbjct: 41 cactggctcagttcagcaggaacaggagtc 70
>27346_mdo-mir-24-2:mirbase
Length = 73
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 68 actggctcagttcagcaggaacaggagtc 96
|||||||||||||||||||||||||||||
Sbjct: 44 actggctcagttcagcaggaacaggagtc 72
>34228_dre-mir-24-1:mirbase
Length = 80
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 67 cactggctcagttcagcaggaacaggagt 95
|||||||||||||||||||||||||||||
Sbjct: 46 cactggctcagttcagcaggaacaggagt 74
>27668_mml-mir-24-2:mirbase
Length = 73
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 66 acactggctcagttcagcaggaacagga 93
||||||||||||||||||||||||||||
Sbjct: 46 acactggctcagttcagcaggaacagga 73
>28184_mne-mir-24-2:mirbase
Length = 73
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 66 acactggctcagttcagcaggaacagga 93
||||||||||||||||||||||||||||
Sbjct: 46 acactggctcagttcagcaggaacagga 73
>34561_fru-mir-24-1:mirbase
Length = 79
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 68 actggctcagttcagcaggaacaggagt 95
||||||||||||||||||||||||||||
Sbjct: 52 actggctcagttcagcaggaacaggagt 79
>34562_fru-mir-24-1:mirbase
Length = 79
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 68 actggctcagttcagcaggaacaggagt 95
||||||||||||||||||||||||||||
Sbjct: 52 actggctcagttcagcaggaacaggagt 79
>26961_eca-mir-24:mirbase
Length = 68
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 68 actggctcagttcagcaggaacaggag 94
|||||||||||||||||||||||||||
Sbjct: 42 actggctcagttcagcaggaacaggag 68
>28270_ggo-mir-24:mirbase
Length = 73
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 66 acactggctcagttcagcaggaacagg 92
|||||||||||||||||||||||||||
Sbjct: 46 acactggctcagttcagcaggaacagg 72
>28378_hsa-mir-24-2:mirbase
Length = 73
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 66 acactggctcagttcagcaggaacagg 92
|||||||||||||||||||||||||||
Sbjct: 46 acactggctcagttcagcaggaacagg 72
>30057_ppa-mir-24-2:mirbase
Length = 73
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 66 acactggctcagttcagcaggaacagg 92
|||||||||||||||||||||||||||
Sbjct: 46 acactggctcagttcagcaggaacagg 72
>30164_ptr-mir-24-2:mirbase
Length = 73
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 66 acactggctcagttcagcaggaacagg 92
|||||||||||||||||||||||||||
Sbjct: 46 acactggctcagttcagcaggaacagg 72
>30769_ppy-mir-24-2:mirbase
Length = 73
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 66 acactggctcagttcagcaggaacagg 92
|||||||||||||||||||||||||||
Sbjct: 46 acactggctcagttcagcaggaacagg 72
>33148_bta-mir-24-2:mirbase
Length = 72
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 66 acactggctcagttcagcaggaacagg 92
|||||||||||||||||||||||||||
Sbjct: 46 acactggctcagttcagcaggaacagg 72
>25444_pma-mir-24:mirbase
Length = 94
Score = 52.0 bits (26), Expect = 9e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 67 cactggctcagttcagcaggaacaggagtc 96
||||||||||||||||||||||||| ||||
Sbjct: 55 cactggctcagttcagcaggaacagaagtc 84
>27345_mdo-mir-24-1:mirbase
Length = 57
Score = 52.0 bits (26), Expect = 9e-08
Identities = 51/58 (87%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 30 ggtgcctactgagctgatatcaggtgattatttgagacactggctcagttcagcagga 87
||||||||||||||||||| ||| | | |||| | ||||||||||||||||||||||
Sbjct: 1 ggtgcctactgagctgataacagttc-tgattttacacactggctcagttcagcagga 57
>26640_cfa-mir-24-2:mirbase
Length = 62
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 68 actggctcagttcagcaggaacagg 92
|||||||||||||||||||||||||
Sbjct: 38 actggctcagttcagcaggaacagg 62
>33928_ssc-mir-24-1:mirbase
Length = 72
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 68 actggctcagttcagcaggaacagg 92
|||||||||||||||||||||||||
Sbjct: 48 actggctcagttcagcaggaacagg 72
>34229_dre-mir-24-2:mirbase
Length = 82
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 68 actggctcagttcagcaggaacagg 92
|||||||||||||||||||||||||
Sbjct: 49 actggctcagttcagcaggaacagg 73
>34231_dre-mir-24-4:mirbase
Length = 90
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 69 ctggctcagttcagcaggaacagg 92
||||||||||||||||||||||||
Sbjct: 55 ctggctcagttcagcaggaacagg 78
>34563_fru-mir-24-2:mirbase
Length = 82
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 69 ctggctcagttcagcaggaacagg 92
||||||||||||||||||||||||
Sbjct: 50 ctggctcagttcagcaggaacagg 73
>34710_tni-mir-24-2:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 69 ctggctcagttcagcaggaacagg 92
||||||||||||||||||||||||
Sbjct: 50 ctggctcagttcagcaggaacagg 73
