miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32511_mmu-mir-3074-1:mirbase
Length = 85
Score = 157 bits (79), Expect = 1e-39
Identities = 79/79 (100%)
Strand = Plus / Minus
Query: 1 cccgccctccggtgcctactgagctgatatcagttctcatttcacacactggctcagttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82 cccgccctccggtgcctactgagctgatatcagttctcatttcacacactggctcagttc 23
Query: 61 agcaggaacaggagtcgag 79
|||||||||||||||||||
Sbjct: 22 agcaggaacaggagtcgag 4
>32512_mmu-mir-3074-1:mirbase
Length = 85
Score = 157 bits (79), Expect = 1e-39
Identities = 79/79 (100%)
Strand = Plus / Minus
Query: 1 cccgccctccggtgcctactgagctgatatcagttctcatttcacacactggctcagttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82 cccgccctccggtgcctactgagctgatatcagttctcatttcacacactggctcagttc 23
Query: 61 agcaggaacaggagtcgag 79
|||||||||||||||||||
Sbjct: 22 agcaggaacaggagtcgag 4
>33024_rno-mir-3074:mirbase
Length = 117
Score = 157 bits (79), Expect = 1e-39
Identities = 79/79 (100%)
Strand = Plus / Minus
Query: 1 cccgccctccggtgcctactgagctgatatcagttctcatttcacacactggctcagttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 cccgccctccggtgcctactgagctgatatcagttctcatttcacacactggctcagttc 36
Query: 61 agcaggaacaggagtcgag 79
|||||||||||||||||||
Sbjct: 35 agcaggaacaggagtcgag 17
>29230_hsa-mir-3074:mirbase
Length = 81
Score = 149 bits (75), Expect = 3e-37
Identities = 78/79 (98%)
Strand = Plus / Minus
Query: 1 cccgccctccggtgcctactgagctgatatcagttctcatttcacacactggctcagttc 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 80 cccgccctccggtgcctactgagctgatatcagttctcattttacacactggctcagttc 21
Query: 61 agcaggaacaggagtcgag 79
|||||||||||||||||||
Sbjct: 20 agcaggaacaggagtcgag 2
>29231_hsa-mir-3074:mirbase
Length = 81
Score = 149 bits (75), Expect = 3e-37
Identities = 78/79 (98%)
Strand = Plus / Minus
Query: 1 cccgccctccggtgcctactgagctgatatcagttctcatttcacacactggctcagttc 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 80 cccgccctccggtgcctactgagctgatatcagttctcattttacacactggctcagttc 21
Query: 61 agcaggaacaggagtcgag 79
|||||||||||||||||||
Sbjct: 20 agcaggaacaggagtcgag 2
>33929_ssc-mir-24-2:mirbase
Length = 80
Score = 147 bits (74), Expect = 1e-36
Identities = 77/78 (98%)
Strand = Plus / Plus
Query: 1 cccgccctccggtgcctactgagctgatatcagttctcatttcacacactggctcagttc 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 3 cccgccctccggtgcctactgagctgatatcagttctcattttacacactggctcagttc 62
Query: 61 agcaggaacaggagtcga 78
||||||||||||||||||
Sbjct: 63 agcaggaacaggagtcga 80
>31791_mmu-mir-24-1:mirbase
Length = 68
Score = 135 bits (68), Expect = 5e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 7 ctccggtgcctactgagctgatatcagttctcatttcacacactggctcagttcagcagg 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatcagttctcatttcacacactggctcagttcagcagg 60
Query: 67 aacaggag 74
||||||||
Sbjct: 61 aacaggag 68
>32675_rno-mir-24-1:mirbase
Length = 68
Score = 135 bits (68), Expect = 5e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 7 ctccggtgcctactgagctgatatcagttctcatttcacacactggctcagttcagcagg 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatcagttctcatttcacacactggctcagttcagcagg 60
Query: 67 aacaggag 74
||||||||
Sbjct: 61 aacaggag 68
>26413_tgu-mir-24:mirbase
Length = 132
Score = 133 bits (67), Expect = 2e-32
Identities = 76/79 (96%)
Strand = Plus / Plus
Query: 1 cccgccctccggtgcctactgagctgatatcagttctcatttcacacactggctcagttc 60
|||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 52 cccgtcctccggtgcctactgagctgatatcagttctgattttacacactggctcagttc 111
Query: 61 agcaggaacaggagtcgag 79
|||||||||||||||||||
Sbjct: 112 agcaggaacaggagtcgag 130
>26962_eca-mir-24-2:mirbase
Length = 68
Score = 127 bits (64), Expect = 1e-30
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 7 ctccggtgcctactgagctgatatcagttctcatttcacacactggctcagttcagcagg 66
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 60
Query: 67 aacaggag 74
||||||||
Sbjct: 61 aacaggag 68
>27667_mml-mir-24-1:mirbase
Length = 68
Score = 127 bits (64), Expect = 1e-30
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 7 ctccggtgcctactgagctgatatcagttctcatttcacacactggctcagttcagcagg 66
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 60
Query: 67 aacaggag 74
||||||||
Sbjct: 61 aacaggag 68
>28183_mne-mir-24-1:mirbase
Length = 68
Score = 127 bits (64), Expect = 1e-30
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 7 ctccggtgcctactgagctgatatcagttctcatttcacacactggctcagttcagcagg 66
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 60
Query: 67 aacaggag 74
||||||||
Sbjct: 61 aacaggag 68
>28377_hsa-mir-24-1:mirbase
Length = 68
Score = 127 bits (64), Expect = 1e-30
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 7 ctccggtgcctactgagctgatatcagttctcatttcacacactggctcagttcagcagg 66
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 60
Query: 67 aacaggag 74
||||||||
Sbjct: 61 aacaggag 68
>30056_ppa-mir-24-1:mirbase
Length = 68
Score = 127 bits (64), Expect = 1e-30
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 7 ctccggtgcctactgagctgatatcagttctcatttcacacactggctcagttcagcagg 66
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 60
Query: 67 aacaggag 74
||||||||
Sbjct: 61 aacaggag 68
>30768_ppy-mir-24-1:mirbase
Length = 68
Score = 127 bits (64), Expect = 1e-30
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 7 ctccggtgcctactgagctgatatcagttctcatttcacacactggctcagttcagcagg 66
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 60
Query: 67 aacaggag 74
||||||||
Sbjct: 61 aacaggag 68
>33147_bta-mir-24-1:mirbase
Length = 68
Score = 127 bits (64), Expect = 1e-30
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 7 ctccggtgcctactgagctgatatcagttctcatttcacacactggctcagttcagcagg 66
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 60
Query: 67 aacaggag 74
||||||||
Sbjct: 61 aacaggag 68
>30163_ptr-mir-24-1:mirbase
Length = 67
Score = 125 bits (63), Expect = 5e-30
Identities = 66/67 (98%)
Strand = Plus / Plus
Query: 8 tccggtgcctactgagctgatatcagttctcatttcacacactggctcagttcagcagga 67
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 tccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagga 60
Query: 68 acaggag 74
|||||||
Sbjct: 61 acaggag 67
>25908_gga-mir-24:mirbase
Length = 68
Score = 111 bits (56), Expect = 7e-26
Identities = 65/68 (95%)
Strand = Plus / Plus
Query: 7 ctccggtgcctactgagctgatatcagttctcatttcacacactggctcagttcagcagg 66
||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatcagttctgattttacatactggctcagttcagcagg 60
Query: 67 aacaggag 74
||||||||
Sbjct: 61 aacaggag 68
>26639_cfa-mir-24-1:mirbase
Length = 62
Score = 107 bits (54), Expect = 1e-24
Identities = 60/62 (96%)
Strand = Plus / Plus
Query: 11 ggtgcctactgagctgatatcagttctcatttcacacactggctcagttcagcaggaaca 70
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1 ggtgcctactgagctgatatcagttctcattgtacacactggctcagttcagcaggaaca 60
Query: 71 gg 72
||
Sbjct: 61 gg 62
>25716_xtr-mir-24a:mirbase
Length = 67
Score = 101 bits (51), Expect = 7e-23
Identities = 61/63 (96%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 12 gtgcctactgagctgatatcagttctcatttcacacactggctcagttcagcaggaacag 71
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 6 gtgcctactgaactgatatcagttct-atttcacacactggctcagttcagcaggaacag 64
Query: 72 gag 74
|||
Sbjct: 65 gag 67
>25717_xtr-mir-24a:mirbase
Length = 67
Score = 101 bits (51), Expect = 7e-23
Identities = 61/63 (96%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 12 gtgcctactgagctgatatcagttctcatttcacacactggctcagttcagcaggaacag 71
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 6 gtgcctactgaactgatatcagttct-atttcacacactggctcagttcagcaggaacag 64
Query: 72 gag 74
|||
Sbjct: 65 gag 67
>31442_oan-mir-24:mirbase
Length = 84
Score = 93.7 bits (47), Expect = 2e-20
Identities = 66/71 (92%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 5 ccctccggtgcctactgagctgatatcagttctcatttcacacactggctcagttcagca 64
|||||| ||||||||||||||||||||||||||| || || ||||||||||||||||||
Sbjct: 8 ccctccagtgcctactgagctgatatcagttctc-gttgacccactggctcagttcagca 66
Query: 65 ggaacaggagt 75
|||||||||||
Sbjct: 67 ggaacaggagt 77
>27345_mdo-mir-24-1:mirbase
Length = 57
Score = 89.7 bits (45), Expect = 3e-19
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 11 ggtgcctactgagctgatatcagttctcatttcacacactggctcagttcagcagga 67
||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||
Sbjct: 1 ggtgcctactgagctgataacagttctgattttacacactggctcagttcagcagga 57
>34230_dre-mir-24-3:mirbase
Length = 142
Score = 63.9 bits (32), Expect = 2e-11
Identities = 62/71 (87%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 6 cctccggtgcctactgagctgatatcagttctcatttcacacactggctcagttcagcag 65
||||| ||||||||||||||||| |||| || | || ||||||||||||||||||||
Sbjct: 38 cctcccgtgcctactgagctgattacagtactg--tgcaaacactggctcagttcagcag 95
Query: 66 gaacaggagtc 76
|||||||||||
Sbjct: 96 gaacaggagtc 106
>31792_mmu-mir-24-2:mirbase
Length = 107
Score = 60.0 bits (30), Expect = 2e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 47 cactggctcagttcagcaggaacaggagtc 76
||||||||||||||||||||||||||||||
Sbjct: 58 cactggctcagttcagcaggaacaggagtc 87
>32513_mmu-mir-3074-2:mirbase
Length = 83
Score = 60.0 bits (30), Expect = 2e-10
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 47 cactggctcagttcagcaggaacaggagtc 76
||||||||||||||||||||||||||||||
Sbjct: 36 cactggctcagttcagcaggaacaggagtc 7
>32514_mmu-mir-3074-2:mirbase
Length = 83
Score = 60.0 bits (30), Expect = 2e-10
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 47 cactggctcagttcagcaggaacaggagtc 76
||||||||||||||||||||||||||||||
Sbjct: 36 cactggctcagttcagcaggaacaggagtc 7
>32676_rno-mir-24-2:mirbase
Length = 108
Score = 60.0 bits (30), Expect = 2e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 47 cactggctcagttcagcaggaacaggagtc 76
||||||||||||||||||||||||||||||
Sbjct: 58 cactggctcagttcagcaggaacaggagtc 87
>34228_dre-mir-24-1:mirbase
Length = 80
Score = 60.0 bits (30), Expect = 2e-10
Identities = 60/69 (86%), Gaps = 2/69 (2%)
Strand = Plus / Plus
Query: 7 ctccggtgcctactgagctgatatcagttctcatttcacacactggctcagttcagcagg 66
||||||||||| ||||||||||||||||| | | | ||||||||||||||||||||
Sbjct: 8 ctccggtgccttctgagctgatatcagttgtagta--aatcactggctcagttcagcagg 65
Query: 67 aacaggagt 75
|||||||||
Sbjct: 66 aacaggagt 74
>34709_tni-mir-24-1:mirbase
Length = 70
Score = 60.0 bits (30), Expect = 2e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 47 cactggctcagttcagcaggaacaggagtc 76
||||||||||||||||||||||||||||||
Sbjct: 41 cactggctcagttcagcaggaacaggagtc 70
>27346_mdo-mir-24-2:mirbase
Length = 73
Score = 58.0 bits (29), Expect = 9e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 48 actggctcagttcagcaggaacaggagtc 76
|||||||||||||||||||||||||||||
Sbjct: 44 actggctcagttcagcaggaacaggagtc 72
>27668_mml-mir-24-2:mirbase
Length = 73
Score = 58.0 bits (29), Expect = 9e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 45 cacactggctcagttcagcaggaacagga 73
|||||||||||||||||||||||||||||
Sbjct: 45 cacactggctcagttcagcaggaacagga 73
>28184_mne-mir-24-2:mirbase
Length = 73
Score = 58.0 bits (29), Expect = 9e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 45 cacactggctcagttcagcaggaacagga 73
|||||||||||||||||||||||||||||
Sbjct: 45 cacactggctcagttcagcaggaacagga 73
>33148_bta-mir-24-2:mirbase
Length = 72
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 45 cacactggctcagttcagcaggaacagg 72
||||||||||||||||||||||||||||
Sbjct: 45 cacactggctcagttcagcaggaacagg 72
>34561_fru-mir-24-1:mirbase
Length = 79
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 48 actggctcagttcagcaggaacaggagt 75
||||||||||||||||||||||||||||
Sbjct: 52 actggctcagttcagcaggaacaggagt 79
>34562_fru-mir-24-1:mirbase
Length = 79
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 48 actggctcagttcagcaggaacaggagt 75
||||||||||||||||||||||||||||
Sbjct: 52 actggctcagttcagcaggaacaggagt 79
>26961_eca-mir-24:mirbase
Length = 68
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 48 actggctcagttcagcaggaacaggag 74
|||||||||||||||||||||||||||
Sbjct: 42 actggctcagttcagcaggaacaggag 68
>28270_ggo-mir-24:mirbase
Length = 73
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 46 acactggctcagttcagcaggaacagg 72
|||||||||||||||||||||||||||
Sbjct: 46 acactggctcagttcagcaggaacagg 72
>28378_hsa-mir-24-2:mirbase
Length = 73
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 46 acactggctcagttcagcaggaacagg 72
|||||||||||||||||||||||||||
Sbjct: 46 acactggctcagttcagcaggaacagg 72
>30057_ppa-mir-24-2:mirbase
Length = 73
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 46 acactggctcagttcagcaggaacagg 72
|||||||||||||||||||||||||||
Sbjct: 46 acactggctcagttcagcaggaacagg 72
>30164_ptr-mir-24-2:mirbase
Length = 73
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 46 acactggctcagttcagcaggaacagg 72
|||||||||||||||||||||||||||
Sbjct: 46 acactggctcagttcagcaggaacagg 72
>30769_ppy-mir-24-2:mirbase
Length = 73
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 46 acactggctcagttcagcaggaacagg 72
|||||||||||||||||||||||||||
Sbjct: 46 acactggctcagttcagcaggaacagg 72
>25444_pma-mir-24:mirbase
Length = 94
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 47 cactggctcagttcagcaggaacaggagtc 76
||||||||||||||||||||||||| ||||
Sbjct: 55 cactggctcagttcagcaggaacagaagtc 84
>26640_cfa-mir-24-2:mirbase
Length = 62
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 48 actggctcagttcagcaggaacagg 72
|||||||||||||||||||||||||
Sbjct: 38 actggctcagttcagcaggaacagg 62
>33928_ssc-mir-24-1:mirbase
Length = 72
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 48 actggctcagttcagcaggaacagg 72
|||||||||||||||||||||||||
Sbjct: 48 actggctcagttcagcaggaacagg 72
>34229_dre-mir-24-2:mirbase
Length = 82
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 48 actggctcagttcagcaggaacagg 72
|||||||||||||||||||||||||
Sbjct: 49 actggctcagttcagcaggaacagg 73
>34231_dre-mir-24-4:mirbase
Length = 90
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 49 ctggctcagttcagcaggaacagg 72
||||||||||||||||||||||||
Sbjct: 55 ctggctcagttcagcaggaacagg 78
>34563_fru-mir-24-2:mirbase
Length = 82
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 49 ctggctcagttcagcaggaacagg 72
||||||||||||||||||||||||
Sbjct: 50 ctggctcagttcagcaggaacagg 73
>34710_tni-mir-24-2:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 49 ctggctcagttcagcaggaacagg 72
||||||||||||||||||||||||
Sbjct: 50 ctggctcagttcagcaggaacagg 73
>25660_xla-mir-24b:mirbase
Length = 68
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 49 ctggctcagttcagcagga 67
|||||||||||||||||||
Sbjct: 44 ctggctcagttcagcagga 62
>25718_xtr-mir-24b:mirbase
Length = 68
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 49 ctggctcagttcagcagga 67
|||||||||||||||||||
Sbjct: 44 ctggctcagttcagcagga 62
