miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51072_osa-miRf11857-akr:pmrd
Length = 72
Score = 127 bits (64), Expect = 1e-30
Identities = 70/72 (97%)
Strand = Plus / Plus
Query: 7 ccgcctgcgaagattgatctttgcaggcggtccatataagcgtcgcctgcgaagatcgat 66
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1 ccgcctacgaagattgatctttgcaggcggtccatataagcgtcgcctgcgaaaatcgat 60
Query: 67 cttcgcaagcgg 78
||||||||||||
Sbjct: 61 cttcgcaagcgg 72
>49766_osa-miRf10551-akr:pmrd
Length = 75
Score = 125 bits (63), Expect = 5e-30
Identities = 72/75 (96%)
Strand = Plus / Plus
Query: 5 gtccgcctgcgaagattgatctttgcaggcggtccatataagcgtcgcctgcgaagatcg 64
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct: 1 gtccacctgcgaagattgatctttgcaggcgggccatataagcgtcgcctgcgaaaatcg 60
Query: 65 atcttcgcaagcggc 79
|||||||||||||||
Sbjct: 61 atcttcgcaagcggc 75
>50517_osa-miRf11302-akr:pmrd
Length = 103
Score = 71.9 bits (36), Expect = 7e-14
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 26 tttgcaggcggtccatataagcgtcgcctgcgaagatcgatcttcgca 73
||||||||||| ||||||||||| |||||| |||||||||||||||||
Sbjct: 1 tttgcaggcgggccatataagcggcgcctgtgaagatcgatcttcgca 48
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 50 cgcctgcgaagatcgatcttc 70
|||||||||||||||||||||
Sbjct: 52 cgcctgcgaagatcgatcttc 32
>51146_osa-miRf11931-akr:pmrd
Length = 124
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 46 gcgtcgcctgcgaagatcgatcttcgcaagcgg 78
|||||||||||||||||||||||||||| ||||
Sbjct: 124 gcgtcgcctgcgaagatcgatcttcgcaggcgg 92
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 1 ggcggtccgcctgcgaagattgatctttgcaggcg 35
|||||||||||||||||||| |||||| |||||||
Sbjct: 86 ggcggtccgcctgcgaagatcgatcttcgcaggcg 120
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 50 cgcctgcgaagatcgatcttcgca 73
||||||||||||||||||||||||
Sbjct: 93 cgcctgcgaagatcgatcttcgca 116
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 8 cgcctgcgaagattgatctttgcaggcgg 36
||||||||||||| |||||| ||||||||
Sbjct: 120 cgcctgcgaagatcgatcttcgcaggcgg 92
>49250_osa-miRf10035-akr:pmrd
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 44 aagcgtcgcctgcgaagatcgatcttcgca 73
||||| ||||||| ||||||||||||||||
Sbjct: 1 aagcggcgcctgctaagatcgatcttcgca 30
Score = 42.1 bits (21), Expect = 6e-05
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 52 cctgcgaagatcgatcttcgcaagcggcagacg 84
|||||||||||| |||||| || ||||||||||
Sbjct: 72 cctgcgaagatccatcttcacaggcggcagacg 40
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 8 cgcctgcgaagattgatctttgcaggcg 35
||||||||||||| |||||| |||||||
Sbjct: 34 cgcctgcgaagatcgatcttagcaggcg 7
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 50 cgcctgcgaagatcgatctt 69
||||||||||||||||||||
Sbjct: 34 cgcctgcgaagatcgatctt 15
>50659_osa-miRf11444-akr:pmrd
Length = 101
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 ggcggtccgcctgcgaagatt 21
|||||||||||||||||||||
Sbjct: 82 ggcggtccgcctgcgaagatt 62
>51196_osa-miRf11981-akr:pmrd
Length = 104
Score = 40.1 bits (20), Expect = 2e-04
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 7 ccgcctgcgaagattgatctttgcaggcggtc 38
|||| |||||||||||||||| ||| ||||||
Sbjct: 68 ccgcatgcgaagattgatcttcgcatgcggtc 37
>49384_osa-miRf10169-akr:pmrd
Length = 123
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 57 gaagatcgatcttcgcaagcggc 79
||||||||||||||||| |||||
Sbjct: 7 gaagatcgatcttcgcatgcggc 29
