miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>31881_mmu-mir-147:mirbase
Length = 79
Score = 113 bits (57), Expect = 2e-26
Identities = 63/65 (96%)
Strand = Plus / Plus
Query: 14 ggaaacatttctgcacaaaatagatgttgttgccagtgtgcggaaatgcttctgctacat 73
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 13 ggaaacatttctgcacaaactagatgttgatgccagtgtgcggaaatgcttctgctacat 72
Query: 74 ttgta 78
|||||
Sbjct: 73 ttgta 77
>32754_rno-mir-147:mirbase
Length = 79
Score = 83.8 bits (42), Expect = 2e-17
Identities = 57/62 (91%)
Strand = Plus / Plus
Query: 14 ggaaacatttctgcacaaaatagatgttgttgccagtgtgcggaaatgcttctgctacat 73
||||||| ||||||||||| | ||| ||| ||||||||||||||||||||||||||||||
Sbjct: 13 ggaaacacttctgcacaaactcgattttgatgccagtgtgcggaaatgcttctgctacat 72
Query: 74 tt 75
||
Sbjct: 73 tt 74
>26722_cfa-mir-147:mirbase
Length = 86
Score = 61.9 bits (31), Expect = 6e-11
Identities = 56/63 (88%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 14 ggaaacatttctgcacaaaatagatgttgt-tgccagtgtgcggaaatgcttctgctaca 72
||||||||| ||||||||| ||||| || | |||||||||||||||||||||||||||
Sbjct: 17 ggaaacattgctgcacaaactagattatggataccagtgtgcggaaatgcttctgctaca 76
Query: 73 ttt 75
|||
Sbjct: 77 ttt 79
>28470_hsa-mir-147b:mirbase
Length = 80
Score = 61.9 bits (31), Expect = 6e-11
Identities = 56/63 (88%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 14 ggaaacatttctgcacaaaatagatgttgttg-ccagtgtgcggaaatgcttctgctaca 72
||||||||||||||||||| ||||| || |||||||||||||||||||||||||||
Sbjct: 13 ggaaacatttctgcacaaactagattctggacaccagtgtgcggaaatgcttctgctaca 72
Query: 73 ttt 75
|||
Sbjct: 73 ttt 75
>30241_ptr-mir-147b:mirbase
Length = 79
Score = 61.9 bits (31), Expect = 6e-11
Identities = 56/63 (88%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 14 ggaaacatttctgcacaaaatagatgttgttg-ccagtgtgcggaaatgcttctgctaca 72
||||||||||||||||||| ||||| || |||||||||||||||||||||||||||
Sbjct: 12 ggaaacatttctgcacaaactagattctggacaccagtgtgcggaaatgcttctgctaca 71
Query: 73 ttt 75
|||
Sbjct: 72 ttt 74
>30854_ppy-mir-147b:mirbase
Length = 80
Score = 61.9 bits (31), Expect = 6e-11
Identities = 56/63 (88%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 14 ggaaacatttctgcacaaaatagatgttgttg-ccagtgtgcggaaatgcttctgctaca 72
||||||||||||||||||| ||||| || |||||||||||||||||||||||||||
Sbjct: 13 ggaaacatttctgcacaaactagattctggacaccagtgtgcggaaatgcttctgctaca 72
Query: 73 ttt 75
|||
Sbjct: 73 ttt 75
>33234_bta-mir-147:mirbase
Length = 80
Score = 60.0 bits (30), Expect = 2e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 46 ccagtgtgcggaaatgcttctgctacattt 75
||||||||||||||||||||||||||||||
Sbjct: 46 ccagtgtgcggaaatgcttctgctacattt 75
>26478_tgu-mir-147:mirbase
Length = 70
Score = 58.0 bits (29), Expect = 9e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 47 cagtgtgcggaaatgcttctgctacattt 75
|||||||||||||||||||||||||||||
Sbjct: 39 cagtgtgcggaaatgcttctgctacattt 67
>25969_gga-mir-147-1:mirbase
Length = 70
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 47 cagtgtgcggaaatgcttctgctacatt 74
||||||||||||||||||||||||||||
Sbjct: 43 cagtgtgcggaaatgcttctgctacatt 70
>25970_gga-mir-147-2:mirbase
Length = 70
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 47 cagtgtgcggaaatgcttctgctacatt 74
||||||||||||||||||||||||||||
Sbjct: 43 cagtgtgcggaaatgcttctgctacatt 70
>27396_mdo-mir-147b:mirbase
Length = 82
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 46 ccagtgtgcggaaatgcttctgctacattt 75
||||||||||||| ||||||||||||||||
Sbjct: 48 ccagtgtgcggaagtgcttctgctacattt 77
>27754_mml-mir-147a:mirbase
Length = 72
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 45 gccagtgtgcggaaatgcttctgctacatt 74
||||||||| ||||||||||||||||||||
Sbjct: 43 gccagtgtgtggaaatgcttctgctacatt 72
>28217_mne-mir-147:mirbase
Length = 72
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 45 gccagtgtgcggaaatgcttctgctacatt 74
||||||||| ||||||||||||||||||||
Sbjct: 43 gccagtgtgtggaaatgcttctgctacatt 72
>27049_eca-mir-147b:mirbase
Length = 80
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 47 cagtgtgcggaaatgcttctgctacattt 75
|||||||| ||||||||||||||||||||
Sbjct: 47 cagtgtgccgaaatgcttctgctacattt 75
>27619_sla-mir-147:mirbase
Length = 72
Score = 44.1 bits (22), Expect = 1e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 45 gccagtgtgcggaaatgcttctgctacatt 74
||||||||| |||||||||||||| |||||
Sbjct: 43 gccagtgtgtggaaatgcttctgccacatt 72
>27755_mml-mir-147b:mirbase
Length = 80
Score = 44.1 bits (22), Expect = 1e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 46 ccagtgtgcggaaatgcttctgctacattt 75
||||||||||||| |||||||||| |||||
Sbjct: 46 ccagtgtgcggaagtgcttctgctgcattt 75
>28469_hsa-mir-147:mirbase
Length = 72
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 45 gccagtgtgcggaaatgcttctgcta 70
||||||||| ||||||||||||||||
Sbjct: 43 gccagtgtgtggaaatgcttctgcta 68
>30100_ppa-mir-147:mirbase
Length = 72
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 45 gccagtgtgcggaaatgcttctgcta 70
||||||||| ||||||||||||||||
Sbjct: 43 gccagtgtgtggaaatgcttctgcta 68
>30240_ptr-mir-147a:mirbase
Length = 72
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 45 gccagtgtgcggaaatgcttctgcta 70
||||||||| ||||||||||||||||
Sbjct: 43 gccagtgtgtggaaatgcttctgcta 68
>30853_ppy-mir-147:mirbase
Length = 72
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 45 gccagtgtgcggaaatgcttctgcta 70
||||||||| ||||||||||||||||
Sbjct: 43 gccagtgtgtggaaatgcttctgcta 68
