miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00693;mir-147;AAHX01006722.1/12190-12258 10116:Rattus
norvegicus (Norway rat)
Length = 69
Score = 89.7 bits (45), Expect = 5e-18
Identities = 60/65 (92%)
Strand = Plus / Plus
Query: 9 tagtggaaacatttttgcacaaactagatgttgatgccagtgtgcggaaatgcttctgct 68
||||||||||| || |||||||||| ||| ||||||||||||||| ||||||||||||||
Sbjct: 5 tagtggaaacacttctgcacaaactcgattttgatgccagtgtgcagaaatgcttctgct 64
Query: 69 acatt 73
|||||
Sbjct: 65 acatt 69
>RF00693;mir-147;ABRQ01122655.1/595-663 9813:Procavia capensis
(cape rock hyrax)
Length = 69
Score = 58.0 bits (29), Expect = 2e-08
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 9 tagtggaaacatttttgcacaaactagatgttgatgccagtgtgcggaaatgcttctgct 68
||||||||||| || |||||||||||||| || |||||||||||| ||||||||||
Sbjct: 5 tagtggaaacacttctgcacaaactagattatggatacagtgtgcggaagtgcttctgct 64
Query: 69 acatt 73
|||||
Sbjct: 65 acatt 69
>RF00693;mir-147;BX934528.1/415-484 9031:Gallus gallus (chicken)
Length = 70
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 46 cagtgtgcggaaatgcttctgctacatt 73
||||||||||||||||||||||||||||
Sbjct: 43 cagtgtgcggaaatgcttctgctacatt 70
>RF00693;mir-147;AANU01202048.1/11100-11029 9544:Macaca mulatta
(rhesus monkey)
Length = 72
Score = 54.0 bits (27), Expect = 3e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 39 ttgatgccagtgtgcggaaatgcttctgctacatt 73
|||| ||||||||| ||||||||||||||||||||
Sbjct: 38 ttgaagccagtgtgtggaaatgcttctgctacatt 72
>RF00693;mir-147;AAWR02019028.1/76654-76723 9796:Equus caballus
(horse)
Length = 70
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 46 cagtgtgcggaaatgcttctgctacatt 73
|||||||| |||||||||||||||||||
Sbjct: 43 cagtgtgccgaaatgcttctgctacatt 70
>RF00693;mir-147;AAYZ01195432.1/14535-14604 9978:Ochotona princeps
(American pika)
Length = 70
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 46 cagtgtgcggaaatgcttctgctacatt 73
|||||||||||| |||||||||||||||
Sbjct: 43 cagtgtgcggaagtgcttctgctacatt 70
>RF00693;mir-147;AAVX01307041.1/135-202 7868:Callorhinchus milii
(ghost shark)
Length = 68
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 46 cagtgtgcggaaatgcttctgctacatt 73
||||||||||||||||||||| ||||||
Sbjct: 41 cagtgtgcggaaatgcttctggtacatt 68
>RF00693;mir-147;ACBE01108147.1/7076-7008 9685:Felis catus
(domestic cat)
Length = 69
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 45 ccagtgtgcggaaatgcttctgctaca 71
|||||||| ||||||||||||||||||
Sbjct: 41 ccagtgtgtggaaatgcttctgctaca 67
>RF00693;mir-147;ABPJ01071875.1/477-549 35575:Mchenga conophoros
Length = 73
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 46 cagtgtgcggaaatgcttctgct 68
|||||||||||||||||||||||
Sbjct: 46 cagtgtgcggaaatgcttctgct 68
>RF00693;mir-147;BAAF04016950.1/22862-22934 8090:Oryzias latipes
(Japanese medaka)
Length = 73
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 46 cagtgtgcggaaatgcttctgct 68
|||||||||||||||||||||||
Sbjct: 46 cagtgtgcggaaatgcttctgct 68
>RF00693;mir-147;ABRP01017253.1/4570-4501 132908:Pteropus vampyrus
(large flying fox)
Length = 70
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 47 agtgtgcggaaatgcttctgctacat 72
|||||| |||||||||||||||||||
Sbjct: 44 agtgtgtggaaatgcttctgctacat 69
>RF00693;mir-147;ABQO010681913.1/1802-1733 9315:Macropus eugenii
(tammar wallaby)
Length = 70
Score = 42.1 bits (21), Expect = 0.001
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 9 tagtggaaacatttttgcacaaactagat 37
|||||||||||||| |||||| |||||||
Sbjct: 5 tagtggaaacatttctgcacagactagat 33
>RF00693;mir-147;ABQO010540357.1/344-413 9315:Macropus eugenii
(tammar wallaby)
Length = 70
Score = 42.1 bits (21), Expect = 0.001
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 45 ccagtgtgcggaaatgcttctgctacatt 73
||||||||| ||| |||||||||||||||
Sbjct: 42 ccagtgtgcagaagtgcttctgctacatt 70
>RF00693;mir-147;AAFR03008278.1/59401-59332 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 70
Score = 42.1 bits (21), Expect = 0.001
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 45 ccagtgtgcggaaatgcttctgctacatt 73
||||||||| ||| |||||||||||||||
Sbjct: 42 ccagtgtgcagaagtgcttctgctacatt 70
>RF00693;mir-147;ABRN01165333.1/9979-9911 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 69
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 45 ccagtgtgcggaaatgcttctgcta 69
|||||||| ||||||||||||||||
Sbjct: 41 ccagtgtgtggaaatgcttctgcta 65
>RF00693;mir-147;ABRN01322131.1/5297-5220 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 78
Score = 42.1 bits (21), Expect = 0.001
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 45 ccagtgtgcggaaatgcttctgctacatt 73
|||||||| ||||||||||||| ||||||
Sbjct: 50 ccagtgtgtggaaatgcttctgttacatt 78
>RF00693;mir-147;AAQR01094649.1/6332-6264 30611:Otolemur garnettii
(small-eared galago)
Length = 69
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 45 ccagtgtgcggaaatgcttctgcta 69
|||||||| ||||||||||||||||
Sbjct: 41 ccagtgtgaggaaatgcttctgcta 65
>RF00693;mir-147;AAKN02027666.1/17442-17511 10141:Cavia porcellus
(domestic guinea pig)
Length = 70
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 45 ccagtgtgcggaaatgcttctgcta 69
||||||||||||| |||||||||||
Sbjct: 42 ccagtgtgcggaagtgcttctgcta 66
>RF00693;mir-147;AANH01000229.1/71291-71222 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 70
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 48 gtgtgcggaaatgcttctgct 68
|||||||||||||||||||||
Sbjct: 45 gtgtgcggaaatgcttctgct 65
