miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;BABK01022869.1/1081-990 34305:Lotus japonicus
Length = 92
Score = 81.8 bits (41), Expect = 1e-15
Identities = 64/69 (92%), Gaps = 2/69 (2%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatcttaacttccctcacttggttgaggagagatcagatcatgtg 60
||||||||||||||||||||||||||||||| | ||| || ||| |||||||||||||||
Sbjct: 14 tgaagctgccagcatgatcttaacttccctc-catgg-tggggaaagatcagatcatgtg 71
Query: 61 gcagtttca 69
|||||||||
Sbjct: 72 gcagtttca 80
>RF00640;MIR167_1;AASG02005785.1/15088-15180 3988:Ricinus communis
(castor bean)
Length = 93
Score = 73.8 bits (37), Expect = 2e-13
Identities = 62/69 (89%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatcttaacttccctcacttggttgaggagagatcagatcatgtg 60
|||||||||||||||||||| || | |||| | | ||||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctaaatcttcctc-cctcgttgaggagagatcagatcatgtg 72
Query: 61 gcagtttca 69
|||||||||
Sbjct: 73 gcagtttca 81
>RF00640;MIR167_1;CAAP02000793.1/41456-41548 29760:Vitis vinifera
Length = 93
Score = 65.9 bits (33), Expect = 6e-11
Identities = 61/69 (88%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatcttaacttccctcacttggttgaggagagatcagatcatgtg 60
|||||||||||||||||||| ||||| | || ||| || || |||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctaaacttgcttccctttgt-gaacagagatcagatcatgtg 72
Query: 61 gcagtttca 69
|||||||||
Sbjct: 73 gcagtttca 81
>RF00640;MIR167_1;AARH01004314.1/38692-38599 3694:Populus
trichocarpa
Length = 94
Score = 60.0 bits (30), Expect = 4e-09
Identities = 62/70 (88%), Gaps = 2/70 (2%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatcttaacttccctcacttggttgaggagag-atcagatcatgt 59
|||||||||||||||||||||| | | |||| ||| |||||||| || | ||||||||||
Sbjct: 14 tgaagctgccagcatgatcttagccttcctc-ctttgttgaggaaagaaacagatcatgt 72
Query: 60 ggcagtttca 69
||||||||||
Sbjct: 73 ggcagtttca 82
>RF00640;MIR167_1;CAAP02000379.1/24621-24714 29760:Vitis vinifera
Length = 94
Score = 52.0 bits (26), Expect = 9e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatcttaacttccct 30
|||||||||||||||||||| |||||||||
Sbjct: 14 tgaagctgccagcatgatctcaacttccct 43
>RF00640;MIR167_1;EU532400.1/147-239 3634:Gossypium barbadense
(sea-island cotton)
Length = 93
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatcttaacttcc 28
|||||||||||||||||||| |||||||
Sbjct: 14 tgaagctgccagcatgatctaaacttcc 41
>RF00640;MIR167_1;ABIM01011014.1/4156-4251 3649:Carica papaya
(papaya)
Length = 96
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatcttaac 24
||||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatcttaac 37
>RF00640;MIR167_1;ABIM01012099.1/6617-6710 3649:Carica papaya
(papaya)
Length = 94
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatcttaactt 26
|||||||||||||||||||| |||||
Sbjct: 14 tgaagctgccagcatgatctaaactt 39
>RF00640;MIR167_1;AARH01008931.1/3492-3395 3694:Populus
trichocarpa
Length = 98
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatcttaactt 26
|||||||||||||||||||| |||||
Sbjct: 14 tgaagctgccagcatgatctgaactt 39
>RF00640;MIR167_1;AC209507.1/126147-126250 4081:Solanum
lycopersicum
Length = 104
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatcttaactt 26
|||||||||||||||||||| |||||
Sbjct: 14 tgaagctgccagcatgatctaaactt 39
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 40 gaggagagatcagatcatgtggcag 64
||||| |||||||||||||||||||
Sbjct: 63 gaggaaagatcagatcatgtggcag 87
>RF00640;MIR167_1;AC225328.1/5014-5119 4081:Solanum lycopersicum
Length = 106
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatcttaactt 26
|||||||||||||||||||| |||||
Sbjct: 14 tgaagctgccagcatgatctaaactt 39
>RF00640;MIR167_1;AC225328.1/13792-13888 4081:Solanum lycopersicum
Length = 97
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatcttaactt 26
|||||||||||||||||||| |||||
Sbjct: 14 tgaagctgccagcatgatctaaactt 39
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 40 gaggagagatcagatcatgtggcag 64
||||| |||||||||||||||||||
Sbjct: 56 gaggaaagatcagatcatgtggcag 80
>RF00640;MIR167_1;AASG02001065.1/6152-6064 3988:Ricinus communis
(castor bean)
Length = 89
Score = 42.1 bits (21), Expect = 8e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 41 aggagagatcagatcatgtggcagtttca 69
|||||||| |||||||||||||||||||
Sbjct: 49 aggagagactagatcatgtggcagtttca 77
