miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00693;mir-147;AAHX01006722.1/12190-12258 10116:Rattus
norvegicus (Norway rat)
Length = 69
Score = 89.7 bits (45), Expect = 6e-18
Identities = 63/69 (91%)
Strand = Plus / Plus
Query: 16 aatctagtggaaacatttctgcaccaactagatgttgatgcccgtgtgcggaaatgcttc 75
||||||||||||||| |||||||| |||| ||| |||||||| |||||| ||||||||||
Sbjct: 1 aatctagtggaaacacttctgcacaaactcgattttgatgccagtgtgcagaaatgcttc 60
Query: 76 tgctacatt 84
|||||||||
Sbjct: 61 tgctacatt 69
>RF00693;mir-147;ABRQ01122655.1/595-663 9813:Procavia capensis
(cape rock hyrax)
Length = 69
Score = 58.0 bits (29), Expect = 2e-08
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 16 aatctagtggaaacatttctgcaccaactagatgttgatgcccgtgtgcggaaatgcttc 75
||||||||||||||| |||||||| |||||||| || | |||||||||| ||||||
Sbjct: 1 aatctagtggaaacacttctgcacaaactagattatggatacagtgtgcggaagtgcttc 60
Query: 76 tgctacatt 84
|||||||||
Sbjct: 61 tgctacatt 69
>RF00693;mir-147;BX934528.1/415-484 9031:Gallus gallus (chicken)
Length = 70
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 59 gtgtgcggaaatgcttctgctacatt 84
||||||||||||||||||||||||||
Sbjct: 45 gtgtgcggaaatgcttctgctacatt 70
>RF00693;mir-147;ABQO010681913.1/1802-1733 9315:Macropus eugenii
(tammar wallaby)
Length = 70
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 16 aatctagtggaaacatttctgcaccaactagat 48
|||||||||||||||||||||||| |||||||
Sbjct: 1 aatctagtggaaacatttctgcacagactagat 33
>RF00693;mir-147;AAFR03018157.1/212021-212090 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 70
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 17 atctagtggaaacatttctgcaccaactaga 47
||||||||||||||| ||||||| |||||||
Sbjct: 2 atctagtggaaacatctctgcacaaactaga 32
>RF00693;mir-147;AAWR02026698.1/2322-2389 9796:Equus caballus
(horse)
Length = 68
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 atctagtggaaacatttctgcac 39
|||||||||||||||||||||||
Sbjct: 2 atctagtggaaacatttctgcac 24
>RF00693;mir-147;AANU01202048.1/11100-11029 9544:Macaca mulatta
(rhesus monkey)
Length = 72
Score = 46.1 bits (23), Expect = 8e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 50 ttgatgcccgtgtgcggaaatgcttctgctacatt 84
|||| ||| ||||| ||||||||||||||||||||
Sbjct: 38 ttgaagccagtgtgtggaaatgcttctgctacatt 72
>RF00693;mir-147;AAWR02019028.1/76654-76723 9796:Equus caballus
(horse)
Length = 70
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 59 gtgtgcggaaatgcttctgctacatt 84
|||||| |||||||||||||||||||
Sbjct: 45 gtgtgccgaaatgcttctgctacatt 70
>RF00693;mir-147;CABD01100245.1/5309-5241 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 69
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 tctagtggaaacatttctgcac 39
||||||||||||||||||||||
Sbjct: 3 tctagtggaaacatttctgcac 24
>RF00693;mir-147;AAYZ01195432.1/14535-14604 9978:Ochotona princeps
(American pika)
Length = 70
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 59 gtgtgcggaaatgcttctgctacatt 84
|||||||||| |||||||||||||||
Sbjct: 45 gtgtgcggaagtgcttctgctacatt 70
>RF00693;mir-147;AAVX01307041.1/135-202 7868:Callorhinchus milii
(ghost shark)
Length = 68
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 59 gtgtgcggaaatgcttctgctacatt 84
||||||||||||||||||| ||||||
Sbjct: 43 gtgtgcggaaatgcttctggtacatt 68
