miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00693;mir-147;AAHX01006722.1/12190-12258 10116:Rattus
norvegicus (Norway rat)
Length = 69
Score = 105 bits (53), Expect = 1e-22
Identities = 65/69 (94%)
Strand = Plus / Plus
Query: 13 aatctagtggaaacatttctgcacaaactagatgttgatgccagtgtgcggaaatgcttc 72
||||||||||||||| ||||||||||||| ||| ||||||||||||||| ||||||||||
Sbjct: 1 aatctagtggaaacacttctgcacaaactcgattttgatgccagtgtgcagaaatgcttc 60
Query: 73 tgctacatt 81
|||||||||
Sbjct: 61 tgctacatt 69
>RF00693;mir-147;ABRQ01122655.1/595-663 9813:Procavia capensis
(cape rock hyrax)
Length = 69
Score = 73.8 bits (37), Expect = 3e-13
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 13 aatctagtggaaacatttctgcacaaactagatgttgatgccagtgtgcggaaatgcttc 72
||||||||||||||| ||||||||||||||||| || |||||||||||| ||||||
Sbjct: 1 aatctagtggaaacacttctgcacaaactagattatggatacagtgtgcggaagtgcttc 60
Query: 73 tgctacatt 81
|||||||||
Sbjct: 61 tgctacatt 69
>RF00693;mir-147;AAYZ01195432.1/14535-14604 9978:Ochotona princeps
(American pika)
Length = 70
Score = 60.0 bits (30), Expect = 5e-09
Identities = 61/70 (87%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 13 aatctagtggaaacatttctgcacaaactagatgttga-tgccagtgtgcggaaatgctt 71
||||||||||||||||||| ||||| ||| ||| || || |||||||||||| |||||
Sbjct: 1 aatctagtggaaacatttccgcacagactcgattatgggtggcagtgtgcggaagtgctt 60
Query: 72 ctgctacatt 81
||||||||||
Sbjct: 61 ctgctacatt 70
>RF00693;mir-147;BX934528.1/415-484 9031:Gallus gallus (chicken)
Length = 70
Score = 60.0 bits (30), Expect = 5e-09
Identities = 61/70 (87%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 13 aatctagtggaaacatttctgcacaaactaga-tgttgatgccagtgtgcggaaatgctt 71
|||||||||||| || ||||||||||||| || | ||| ||||||||||||||||||
Sbjct: 1 aatctagtggaatcacttctgcacaaacttgactactgaaatcagtgtgcggaaatgctt 60
Query: 72 ctgctacatt 81
||||||||||
Sbjct: 61 ctgctacatt 70
>RF00693;mir-147;ABQO010681913.1/1802-1733 9315:Macropus eugenii
(tammar wallaby)
Length = 70
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 13 aatctagtggaaacatttctgcacaaactagat 45
||||||||||||||||||||||||| |||||||
Sbjct: 1 aatctagtggaaacatttctgcacagactagat 33
>RF00693;mir-147;AAFR03018157.1/212021-212090 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 70
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 14 atctagtggaaacatttctgcacaaactaga 44
||||||||||||||| |||||||||||||||
Sbjct: 2 atctagtggaaacatctctgcacaaactaga 32
>RF00693;mir-147;AANU01202048.1/11100-11029 9544:Macaca mulatta
(rhesus monkey)
Length = 72
Score = 54.0 bits (27), Expect = 3e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 47 ttgatgccagtgtgcggaaatgcttctgctacatt 81
|||| ||||||||| ||||||||||||||||||||
Sbjct: 38 ttgaagccagtgtgtggaaatgcttctgctacatt 72
>RF00693;mir-147;AAWR02026698.1/2322-2389 9796:Equus caballus
(horse)
Length = 68
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 14 atctagtggaaacatttctgcacaa 38
|||||||||||||||||||||||||
Sbjct: 2 atctagtggaaacatttctgcacaa 26
>RF00693;mir-147;AAWR02019028.1/76654-76723 9796:Equus caballus
(horse)
Length = 70
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 54 cagtgtgcggaaatgcttctgctacatt 81
|||||||| |||||||||||||||||||
Sbjct: 43 cagtgtgccgaaatgcttctgctacatt 70
>RF00693;mir-147;CABD01100245.1/5309-5241 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 69
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 tctagtggaaacatttctgcacaa 38
||||||||||||||||||||||||
Sbjct: 3 tctagtggaaacatttctgcacaa 26
>RF00693;mir-147;AAKN02005203.1/37099-37168 10141:Cavia porcellus
(domestic guinea pig)
Length = 70
Score = 48.1 bits (24), Expect = 2e-05
Identities = 52/60 (86%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 23 aaacatttctgcacaaactaga-tgttgatgccagtgtgcggaaatgcttctgctacatt 81
|||||||||||||||||| ||| | |||| |||||||| || ||||||||||||||||
Sbjct: 11 aaacatttctgcacaaaccagactattgaatccagtgtggggcgatgcttctgctacatt 70
>RF00693;mir-147;AAVX01307041.1/135-202 7868:Callorhinchus milii
(ghost shark)
Length = 68
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 54 cagtgtgcggaaatgcttctgctacatt 81
||||||||||||||||||||| ||||||
Sbjct: 41 cagtgtgcggaaatgcttctggtacatt 68
>RF00693;mir-147;AAFC03018591.1/6229-6298 9913:Bos taurus (cattle)
Length = 70
Score = 46.1 bits (23), Expect = 8e-05
Identities = 54/63 (85%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 20 tggaaacatttctgcacaaactaga-tgttgatgccagtgtgcggaaatgcttctgctac 78
|||||||||||||||||||||| || | | ||| ||| ||||| |||||||| ||||||
Sbjct: 8 tggaaacatttctgcacaaactcgattatggataccaatgtgccaaaatgcttttgctac 67
Query: 79 att 81
|||
Sbjct: 68 att 70
>RF00693;mir-147;AANG01714059.1/489-419 9685:Felis catus (domestic
cat)
Length = 71
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 23 aaacatttctgcacaaactagat 45
|||||||||||||||||||||||
Sbjct: 11 aaacatttctgcacaaactagat 33
>RF00693;mir-147;ACBE01108147.1/7076-7008 9685:Felis catus
(domestic cat)
Length = 69
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 53 ccagtgtgcggaaatgcttctgctaca 79
|||||||| ||||||||||||||||||
Sbjct: 41 ccagtgtgtggaaatgcttctgctaca 67
>RF00693;mir-147;AAEX02028076.1/21466-21402 9615:Canis lupus
familiaris (dog)
Length = 65
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 tggaaacatttctgcacaaacta 42
|||||||||||||||||||||||
Sbjct: 8 tggaaacatttctgcacaaacta 30
>RF00693;mir-147;ABPJ01071875.1/477-549 35575:Mchenga conophoros
Length = 73
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 54 cagtgtgcggaaatgcttctgct 76
|||||||||||||||||||||||
Sbjct: 46 cagtgtgcggaaatgcttctgct 68
>RF00693;mir-147;BAAF04016950.1/22862-22934 8090:Oryzias latipes
(Japanese medaka)
Length = 73
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 54 cagtgtgcggaaatgcttctgct 76
|||||||||||||||||||||||
Sbjct: 46 cagtgtgcggaaatgcttctgct 68
>RF00693;mir-147;AAFR03008278.1/59401-59332 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 70
Score = 44.1 bits (22), Expect = 3e-04
Identities = 59/70 (84%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 13 aatctagtggaaacatttctgcacaaactaga-tgttgatgccagtgtgcggaaatgctt 71
||||||| ||||||| |||||| |||||||| | ||| ||||||||| ||| |||||
Sbjct: 1 aatctagctgaaacatctctgcataaactagactactgaaaccagtgtgcagaagtgctt 60
Query: 72 ctgctacatt 81
||||||||||
Sbjct: 61 ctgctacatt 70
>RF00693;mir-147;ABRP01017253.1/4570-4501 132908:Pteropus vampyrus
(large flying fox)
Length = 70
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 55 agtgtgcggaaatgcttctgctacat 80
|||||| |||||||||||||||||||
Sbjct: 44 agtgtgtggaaatgcttctgctacat 69
>RF00693;mir-147;ABRN01368247.1/244-313 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 70
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 20 tggaaacatttctgcacaaactagat 45
|||||||||||||||||||| |||||
Sbjct: 8 tggaaacatttctgcacaaagtagat 33
>RF00693;mir-147;AANG01591628.1/889-825 9685:Felis catus (domestic
cat)
Length = 65
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 ggaaacatttctgcacaaacta 42
||||||||||||||||||||||
Sbjct: 9 ggaaacatttctgcacaaacta 30
