miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48569_gma-miR171m:pmrd
Length = 172
Score = 85.7 bits (43), Expect = 2e-17
Identities = 84/97 (86%), Gaps = 3/97 (3%)
Strand = Plus / Plus
Query: 201 gagaagtaattgcaaggcctccttgaagtaaaaagcagtcctttgataaggcttaccgat 260
||||||||||||||||||||| ||||| |||||||||| ||| ||| ||||||| || ||
Sbjct: 79 gagaagtaattgcaaggcctctttgaaataaaaagcagccctctgaaaaggcttcccaat 138
Query: 261 tggaacagagagctggtgattgagccgcgccaatatc 297
|| ||| || ||||||||||||||||||||||||
Sbjct: 139 ggg---agaaagttggtgattgagccgcgccaatatc 172
>48484_gcl-miR171:pmrd
Length = 205
Score = 61.9 bits (31), Expect = 3e-10
Identities = 72/85 (84%), Gaps = 3/85 (3%)
Strand = Plus / Plus
Query: 213 caaggcctccttgaagtaaaaagcagtcctttgataaggcttaccgattggaacagagag 272
|||||||||||| | || ||||||| ||| ||| |||||||||| || || |||||
Sbjct: 124 caaggcctccttcatatagaaagcagccctctgaaaaggcttaccaataggg---gagag 180
Query: 273 ctggtgattgagccgcgccaatatc 297
|||||||||||||||||||||||||
Sbjct: 181 ctggtgattgagccgcgccaatatc 205
Score = 52.0 bits (26), Expect = 3e-07
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 93 aaaatttgcaaactgaaggatcggtgagatctcagagaaggatttataagcaccaatctt 152
|||||| ||||||||||| | ||||| |||||||| ||||| || ||||| ||||| ||
Sbjct: 1 aaaattggcaaactgaagaacaggtgatatctcagaaaaggacttgtaagctccaatttt 60
Query: 153 gaaaat 158
||||||
Sbjct: 61 gaaaat 66
>54451_sbi-miR170:pmrd
Length = 55
Score = 54.0 bits (27), Expect = 6e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 271 agctggtgattgagccgcgccaatatc 297
|||||||||||||||||||||||||||
Sbjct: 29 agctggtgattgagccgcgccaatatc 55
>48313_bdi-miR171d:pmrd
Length = 107
Score = 54.0 bits (27), Expect = 6e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 271 agctggtgattgagccgcgccaatatc 297
|||||||||||||||||||||||||||
Sbjct: 75 agctggtgattgagccgcgccaatatc 101
>48311_bdi-miR171a:pmrd
Length = 120
Score = 54.0 bits (27), Expect = 6e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 271 agctggtgattgagccgcgccaatatc 297
|||||||||||||||||||||||||||
Sbjct: 44 agctggtgattgagccgcgccaatatc 70
>55027_zma-miR170p:pmrd
Length = 62
Score = 48.1 bits (24), Expect = 4e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 270 gagctggtgattgagccgcgccaatatc 297
|||| |||||||||||||||||||||||
Sbjct: 35 gagccggtgattgagccgcgccaatatc 62
>46976_ath-miR170n:pmrd
Length = 172
Score = 48.1 bits (24), Expect = 4e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 274 tggtgattgagccgcgccaatatc 297
||||||||||||||||||||||||
Sbjct: 149 tggtgattgagccgcgccaatatc 172
>46982_ath-miR171o:pmrd
Length = 339
Score = 44.1 bits (22), Expect = 6e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 276 gtgattgagccgcgccaatatc 297
||||||||||||||||||||||
Sbjct: 318 gtgattgagccgcgccaatatc 339
>55028_zma-miR171a:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 277 tgattgagccgcgccaatatc 297
|||||||||||||||||||||
Sbjct: 79 tgattgagccgcgccaatatc 99
>54832_vvi-miR171e:pmrd
Length = 103
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 277 tgattgagccgcgccaatatc 297
|||||||||||||||||||||
Sbjct: 70 tgattgagccgcgccaatatc 90
>54667_stu-miR171:pmrd
Length = 124
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 277 tgattgagccgcgccaatatc 297
|||||||||||||||||||||
Sbjct: 1 tgattgagccgcgccaatatc 21
>54666_stu-miR170:pmrd
Length = 124
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 277 tgattgagccgcgccaatatc 297
|||||||||||||||||||||
Sbjct: 1 tgattgagccgcgccaatatc 21
>54553_sly-miR171c:pmrd
Length = 121
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 277 tgattgagccgcgccaatatc 297
|||||||||||||||||||||
Sbjct: 78 tgattgagccgcgccaatatc 98
>54461_sbi-miR171j:pmrd
Length = 108
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 277 tgattgagccgcgccaatatc 297
|||||||||||||||||||||
Sbjct: 83 tgattgagccgcgccaatatc 103
>54458_sbi-miR171g:pmrd
Length = 77
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 277 tgattgagccgcgccaatatc 297
|||||||||||||||||||||
Sbjct: 57 tgattgagccgcgccaatatc 77
>48895_osa-miR171a:pmrd
Length = 96
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 277 tgattgagccgcgccaatatc 297
|||||||||||||||||||||
Sbjct: 67 tgattgagccgcgccaatatc 87
>48636_gra-miR171:pmrd
Length = 117
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 277 tgattgagccgcgccaatatc 297
|||||||||||||||||||||
Sbjct: 1 tgattgagccgcgccaatatc 21
>48407_bra-miR171e:pmrd
Length = 119
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 277 tgattgagccgcgccaatatc 297
|||||||||||||||||||||
Sbjct: 84 tgattgagccgcgccaatatc 104
>48369_bna-miR171g:pmrd
Length = 115
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 277 tgattgagccgcgccaatatc 297
|||||||||||||||||||||
Sbjct: 78 tgattgagccgcgccaatatc 98
>48368_bna-miR171f:pmrd
Length = 119
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 277 tgattgagccgcgccaatatc 297
|||||||||||||||||||||
Sbjct: 84 tgattgagccgcgccaatatc 104
>46981_ath-miR171n:pmrd
Length = 461
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 277 tgattgagccgcgccaatatc 297
|||||||||||||||||||||
Sbjct: 1 tgattgagccgcgccaatatc 21
>46980_ath-miR171m:pmrd
Length = 92
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 277 tgattgagccgcgccaatatc 297
|||||||||||||||||||||
Sbjct: 72 tgattgagccgcgccaatatc 92
>46977_ath-miR171a:pmrd
Length = 123
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 277 tgattgagccgcgccaatatc 297
|||||||||||||||||||||
Sbjct: 88 tgattgagccgcgccaatatc 108
>46975_ath-miR170m:pmrd
Length = 92
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 277 tgattgagccgcgccaatatc 297
|||||||||||||||||||||
Sbjct: 72 tgattgagccgcgccaatatc 92
>46853_ace-miR171c:pmrd
Length = 216
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 277 tgattgagccgcgccaatatc 297
|||||||||||||||||||||
Sbjct: 196 tgattgagccgcgccaatatc 216
>46852_ace-miR171b:pmrd
Length = 215
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 277 tgattgagccgcgccaatatc 297
|||||||||||||||||||||
Sbjct: 195 tgattgagccgcgccaatatc 215
>46851_ace-miR171a:pmrd
Length = 89
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 277 tgattgagccgcgccaatatc 297
|||||||||||||||||||||
Sbjct: 1 tgattgagccgcgccaatatc 21
>46850_ace-miR170d:pmrd
Length = 215
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 277 tgattgagccgcgccaatatc 297
|||||||||||||||||||||
Sbjct: 195 tgattgagccgcgccaatatc 215
>46849_ace-miR170c:pmrd
Length = 55
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 277 tgattgagccgcgccaatatc 297
|||||||||||||||||||||
Sbjct: 1 tgattgagccgcgccaatatc 21
>46848_ace-miR170b:pmrd
Length = 76
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 277 tgattgagccgcgccaatatc 297
|||||||||||||||||||||
Sbjct: 56 tgattgagccgcgccaatatc 76
>46847_ace-miR170a:pmrd
Length = 89
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 277 tgattgagccgcgccaatatc 297
|||||||||||||||||||||
Sbjct: 1 tgattgagccgcgccaatatc 21
>54910_zel-miR171:pmrd
Length = 65
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 278 gattgagccgcgccaatatc 297
||||||||||||||||||||
Sbjct: 2 gattgagccgcgccaatatc 21
>54833_vvi-miR171f:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 278 gattgagccgcgccaatatc 297
||||||||||||||||||||
Sbjct: 71 gattgagccgcgccaatatc 90
>54554_sly-miR171d:pmrd
Length = 112
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 278 gattgagccgcgccaatatc 297
||||||||||||||||||||
Sbjct: 73 gattgagccgcgccaatatc 92
>52488_ptc-miRf10666-akr:pmrd
Length = 93
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 278 gattgagccgcgccaatatc 297
||||||||||||||||||||
Sbjct: 68 gattgagccgcgccaatatc 87
>52331_ptc-miRf10509-akr:pmrd
Length = 99
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 278 gattgagccgcgccaatatc 297
||||||||||||||||||||
Sbjct: 73 gattgagccgcgccaatatc 92
>51694_ptc-miR171k:pmrd
Length = 78
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 278 gattgagccgcgccaatatc 297
||||||||||||||||||||
Sbjct: 59 gattgagccgcgccaatatc 78
>51687_ptc-miR171d:pmrd
Length = 100
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 278 gattgagccgcgccaatatc 297
||||||||||||||||||||
Sbjct: 72 gattgagccgcgccaatatc 91
>51686_ptc-miR171c:pmrd
Length = 104
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 278 gattgagccgcgccaatatc 297
||||||||||||||||||||
Sbjct: 76 gattgagccgcgccaatatc 95
>51383_ppt-miR171b:pmrd
Length = 92
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 278 gattgagccgcgccaatatc 297
||||||||||||||||||||
Sbjct: 65 gattgagccgcgccaatatc 84
>51382_ppt-miR171a:pmrd
Length = 91
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 278 gattgagccgcgccaatatc 297
||||||||||||||||||||
Sbjct: 64 gattgagccgcgccaatatc 83
>48497_ghr-miR171:pmrd
Length = 85
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 278 gattgagccgcgccaatatc 297
||||||||||||||||||||
Sbjct: 66 gattgagccgcgccaatatc 85
