miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00452;mir-172;AARH01003915.1/155600-155740 3694:Populus
trichocarpa
Length = 141
Score = 276 bits (139), Expect = 7e-74
Identities = 139/139 (100%)
Strand = Plus / Plus
Query: 1 gtttgcgggtggagcatcatcaagattcacatgcaaatgcacggccggtgatgttaagag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gtttgcgggtggagcatcatcaagattcacatgcaaatgcacggccggtgatgttaagag 62
Query: 61 ttaaatctttctttgtttctgttcatctgccaaagttctttggaagtgagaatcttgatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 ttaaatctttctttgtttctgttcatctgccaaagttctttggaagtgagaatcttgatg 122
Query: 121 atgctgcatcggcaataaa 139
|||||||||||||||||||
Sbjct: 123 atgctgcatcggcaataaa 141
>RF00452;mir-172;AC182714.2/88903-88742 3694:Populus trichocarpa
Length = 162
Score = 133 bits (67), Expect = 7e-31
Identities = 73/75 (97%)
Strand = Plus / Plus
Query: 65 atctttctttgtttctgttcatctgccaaagttctttggaagtgagaatcttgatgatgc 124
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88 atctttctttctttctgatcatctgccaaagttctttggaagtgagaatcttgatgatgc 147
Query: 125 tgcatcggcaataaa 139
|||||||||||||||
Sbjct: 148 tgcatcggcaataaa 162
Score = 63.9 bits (32), Expect = 5e-10
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 1 gtttgcgggtggagcatcatcaagattcacatgcaaatgcacggccggtgat 52
||||||||||| |||||| ||||||||||||||||||||| ||||| ||||
Sbjct: 3 gtttgcgggtgctgcatcaccaagattcacatgcaaatgcatggccgatgat 54
>RF00452;mir-172;AASG02011039.1/5310-5468 3988:Ricinus communis
(castor bean)
Length = 159
Score = 81.8 bits (41), Expect = 2e-15
Identities = 50/53 (94%)
Strand = Plus / Plus
Query: 1 gtttgcgggtggagcatcatcaagattcacatgcaaatgcacggccggtgatg 53
||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 3 gtttgcgggtgtagcatcatcaagattcacatgcaaatgcacggttggtgatg 55
Score = 65.9 bits (33), Expect = 1e-10
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 99 tttggaagtgagaatcttgatgatgctgcatcggcaataaa 139
|||| ||||||||||||||||||||||||||| ||||||||
Sbjct: 119 tttgaaagtgagaatcttgatgatgctgcatcagcaataaa 159
>RF00452;mir-172;ABIM01030483.1/4658-4870 3649:Carica papaya
(papaya)
Length = 213
Score = 73.8 bits (37), Expect = 5e-13
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 89 gccaaagttctttggaagtgagaatcttgatgatgctgcatcggcaata 137
|||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 163 gccaaagttctttgagagtgagaatcttgatgatgctgcatcgacaata 211
Score = 58.0 bits (29), Expect = 3e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 2 tttgcgggtggagcatcatcaagattcacatgcaaat 38
|||| ||||| ||||||||||||||||||||||||||
Sbjct: 4 tttgtgggtgtagcatcatcaagattcacatgcaaat 40
>RF00452;mir-172;CAAP02003282.1/14594-14705 29760:Vitis vinifera
Length = 112
Score = 65.9 bits (33), Expect = 1e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 107 tgagaatcttgatgatgctgcatcggcaataaa 139
|||||||||||||||||||||||||||||||||
Sbjct: 80 tgagaatcttgatgatgctgcatcggcaataaa 112
Score = 63.9 bits (32), Expect = 5e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 13 agcatcatcaagattcacatgcaaatgcacgg 44
||||||||||||||||||||||||||||||||
Sbjct: 15 agcatcatcaagattcacatgcaaatgcacgg 46
>RF00452;mir-172;BABK01027900.1/1116-1276 34305:Lotus japonicus
Length = 161
Score = 61.9 bits (31), Expect = 2e-09
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 97 tctttggaagtgagaatcttgatgatgctgcatcggcaataaa 139
||||| ||||||||||||||||||||||||||| ||| |||||
Sbjct: 119 tcttttgaagtgagaatcttgatgatgctgcattggccataaa 161
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 13 agcatcatcaagattcacatgcaaatgca 41
|||| ||||||||||||||||||||||||
Sbjct: 15 agcaccatcaagattcacatgcaaatgca 43
>RF00452;mir-172;AM457961.2/1662-1782 29760:Vitis vinifera
Length = 121
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 107 tgagaatcttgatgatgctgcatcggcaata 137
|||||||||||||||||||||||||||||||
Sbjct: 89 tgagaatcttgatgatgctgcatcggcaata 119
Score = 58.0 bits (29), Expect = 3e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 1 gtttgcgggtggagcatcatcaagattcacatgcaaa 37
|||||| |||| |||||||||||||||||||||||||
Sbjct: 3 gtttgcaggtgtagcatcatcaagattcacatgcaaa 39
>RF00452;mir-172;CAAP02000586.1/29172-29291 29760:Vitis vinifera
Length = 120
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 107 tgagaatcttgatgatgctgcatcggcaata 137
|||||||||||||||||||||||||||||||
Sbjct: 88 tgagaatcttgatgatgctgcatcggcaata 118
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 1 gtttgcgggtggagcatcatcaagattcacatgc 34
|||||| |||| ||||||||||||||||||||||
Sbjct: 3 gtttgcaggtgtagcatcatcaagattcacatgc 36
>RF00452;mir-172;FM163855.1/191-306 3702:Arabidopsis thaliana (thale
cress)
Length = 116
Score = 60.0 bits (30), Expect = 8e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 107 tgagaatcttgatgatgctgcatcggcaat 136
||||||||||||||||||||||||||||||
Sbjct: 84 tgagaatcttgatgatgctgcatcggcaat 113
>RF00452;mir-172;ABIM01012229.1/3274-3102 3649:Carica papaya
(papaya)
Length = 173
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 107 tgagaatcttgatgatgctgcatcggcaataaa 139
||||||||||||||||||||||||||| |||||
Sbjct: 141 tgagaatcttgatgatgctgcatcggccataaa 173
>RF00452;mir-172;BABK01107385.1/174-85 34305:Lotus japonicus
Length = 90
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 107 tgagaatcttgatgatgctgcatcggcaataaa 139
|||||||||||||||||||||||| ||||||||
Sbjct: 58 tgagaatcttgatgatgctgcatcagcaataaa 90
>RF00452;mir-172;AARH01004415.1/120029-119901 3694:Populus
trichocarpa
Length = 129
Score = 56.0 bits (28), Expect = 1e-07
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 96 ttctttggaagtgagaatcttgatgatgctgcatcggcaataaa 139
||||||| | ||||||||||||||||||||||||| || |||||
Sbjct: 86 ttctttgaaggtgagaatcttgatgatgctgcatcagccataaa 129
Score = 50.1 bits (25), Expect = 8e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 1 gtttgcgggtggagcatcatcaagattcacatgcaaa 37
|||||| |||| |||||||||||||||||||| ||||
Sbjct: 3 gtttgcaggtgcagcatcatcaagattcacattcaaa 39
>RF00452;mir-172;ABIM01001078.1/716-916 3649:Carica papaya
(papaya)
Length = 201
Score = 54.0 bits (27), Expect = 5e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 gtttgcgggtggagcatcatcaagattcaca 31
|||||||| ||||||||||||||||||||||
Sbjct: 3 gtttgcggatggagcatcatcaagattcaca 33
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 110 gaatcttgatgatgctgcatcggcaataaa 139
||||||||||||||||||| ||||||||||
Sbjct: 172 gaatcttgatgatgctgcagcggcaataaa 201
>RF00452;mir-172;BABK01012763.1/1927-2053 34305:Lotus japonicus
Length = 127
Score = 54.0 bits (27), Expect = 5e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 gtttgcgggtggagcatcatcaagattcaca 31
|||||| ||||||||||||||||||||||||
Sbjct: 3 gtttgctggtggagcatcatcaagattcaca 33
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 107 tgagaatcttgatgatgctgca 128
||||||||||||||||||||||
Sbjct: 100 tgagaatcttgatgatgctgca 121
>RF00452;mir-172;AM481129.2/11694-11833 29760:Vitis vinifera
Length = 140
Score = 54.0 bits (27), Expect = 5e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 gtttgcgggtggagcatcatcaagattcaca 31
|||||||| ||||||||||||||||||||||
Sbjct: 3 gtttgcggatggagcatcatcaagattcaca 33
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 110 gaatcttgatgatgctgcatcggcaataaa 139
||||||||||||||||||| ||||||||||
Sbjct: 111 gaatcttgatgatgctgcagcggcaataaa 140
>RF00452;mir-172;EU549232.1/232-344 3702:Arabidopsis thaliana (thale
cress)
Length = 113
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 107 tgagaatcttgatgatgctgcatcggcaat 136
|||||||||||||||||||||| |||||||
Sbjct: 81 tgagaatcttgatgatgctgcagcggcaat 110
>RF00452;mir-172;AARH01004394.1/257332-257189 3694:Populus
trichocarpa
Length = 144
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 110 gaatcttgatgatgctgcatcggcaataaa 139
||||||||||||||||||| ||||||||||
Sbjct: 115 gaatcttgatgatgctgcagcggcaataaa 144
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 tggagcatcatcaagattcaca 31
||||||||||||||||||||||
Sbjct: 12 tggagcatcatcaagattcaca 33
>RF00452;mir-172;AARH01003860.1/86743-86610 3694:Populus trichocarpa
Length = 134
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 110 gaatcttgatgatgctgcatcggcaa 135
||||||||||||||||||||||||||
Sbjct: 105 gaatcttgatgatgctgcatcggcaa 130
>RF00452;mir-172;AARH01003539.1/168033-168162 3694:Populus
trichocarpa
Length = 130
Score = 52.0 bits (26), Expect = 2e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 1 gtttgcgggtggagcatcatcaagattcacatgcaaat 38
|||||| |||| |||||||||||||||||||| |||||
Sbjct: 3 gtttgcaggtgcagcatcatcaagattcacattcaaat 40
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 106 gtgagaatcttgatgatgctgcatcggcaataaa 139
||||||||||||||||||||||||| || |||||
Sbjct: 97 gtgagaatcttgatgatgctgcatcagccataaa 130
>RF00452;mir-172;AARH01000428.1/33766-33584 3694:Populus trichocarpa
Length = 183
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 110 gaatcttgatgatgctgcatcggcaa 135
||||||||||||||||||||||||||
Sbjct: 154 gaatcttgatgatgctgcatcggcaa 179
>RF00452;mir-172;AASG02005670.1/14724-14879 3988:Ricinus communis
(castor bean)
Length = 156
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 110 gaatcttgatgatgctgcatcggcaataaa 139
||||||||||||||||||| ||||||||||
Sbjct: 127 gaatcttgatgatgctgcagcggcaataaa 156
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 gtttgcgggtggagcatcatcaagattcaca 31
|||||| | ||||||||||||||||||||||
Sbjct: 3 gtttgctgatggagcatcatcaagattcaca 33
>RF00452;mir-172;AASG02049897.1/697-856 3988:Ricinus communis
(castor bean)
Length = 160
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 97 tctttggaagtgagaatcttgatgatgctgcatc 130
|||||| | |||||||||||||||||||||||||
Sbjct: 118 tctttgaaggtgagaatcttgatgatgctgcatc 151
Score = 50.1 bits (25), Expect = 8e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 1 gtttgcgggtggagcatcatcaagattcacatgcaaa 37
|||||| |||| ||||||| |||||||||||||||||
Sbjct: 3 gtttgcaggtgcagcatcaccaagattcacatgcaaa 39
>RF00452;mir-172;AASG02019478.1/457-599 3988:Ricinus communis
(castor bean)
Length = 143
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 107 tgagaatcttgatgatgctgcatcggcaa 135
|||||||||||||||||||||||| ||||
Sbjct: 111 tgagaatcttgatgatgctgcatcagcaa 139
>RF00452;mir-172;BABK01039752.1/451-284 34305:Lotus japonicus
Length = 168
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 107 tgagaatcttgatgatgctgcatcggcaa 135
|||||||||||||||||||||||| ||||
Sbjct: 136 tgagaatcttgatgatgctgcatcagcaa 164
>RF00452;mir-172;ABXC01006306.1/12162-12041 4558:Sorghum bicolor
(sorghum)
Length = 122
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 107 tgagaatcttgatgatgctgcatcggcaa 135
|||||||||||||||||||||||| ||||
Sbjct: 90 tgagaatcttgatgatgctgcatcagcaa 118
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 3 ttgcgggtggagcatcatcaagattcacat 32
|||| |||| ||||||||||||||||||||
Sbjct: 5 ttgcaggtgcagcatcatcaagattcacat 34
>RF00452;mir-172;EU869069.1/352-463 39946:Oryza sativa Indica Group
Length = 112
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 107 tgagaatcttgatgatgctgcatcggcaa 135
|||||||||||||||||||||||| ||||
Sbjct: 80 tgagaatcttgatgatgctgcatcagcaa 108
>RF00452;mir-172;AC189388.2/19492-19378 51351:Brassica rapa subsp.
pekinensis
Length = 115
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 107 tgagaatcttgatgatgctgcatc 130
||||||||||||||||||||||||
Sbjct: 83 tgagaatcttgatgatgctgcatc 106
>RF00452;mir-172;FM163882.1/53-161 3702:Arabidopsis thaliana (thale
cress)
Length = 109
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 107 tgagaatcttgatgatgctgcatc 130
||||||||||||||||||||||||
Sbjct: 77 tgagaatcttgatgatgctgcatc 100
>RF00452;mir-172;EU945504.1/992-1139 4577:Zea mays
Length = 148
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 107 tgagaatcttgatgatgctgcatc 130
||||||||||||||||||||||||
Sbjct: 116 tgagaatcttgatgatgctgcatc 139
>RF00452;mir-172;ABXC01002997.1/14893-14755 4558:Sorghum bicolor
(sorghum)
Length = 139
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 107 tgagaatcttgatgatgctgcatc 130
||||||||||||||||||||||||
Sbjct: 107 tgagaatcttgatgatgctgcatc 130
>RF00452;mir-172;ABXC01001026.1/165015-165125 4558:Sorghum bicolor
(sorghum)
Length = 111
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 107 tgagaatcttgatgatgctgcatc 130
||||||||||||||||||||||||
Sbjct: 79 tgagaatcttgatgatgctgcatc 102
>RF00452;mir-172;AP006162.2/95640-95748 39947:Oryza sativa Japonica
Group
Length = 109
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 107 tgagaatcttgatgatgctgcatc 130
||||||||||||||||||||||||
Sbjct: 77 tgagaatcttgatgatgctgcatc 100
>RF00452;mir-172;EU549250.1/242-366 3702:Arabidopsis thaliana (thale
cress)
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 105 agtgagaatcttgatgatgctgcatcggcaa 135
|||| ||||||||||||||||||||| ||||
Sbjct: 91 agtgggaatcttgatgatgctgcatcagcaa 121
>RF00452;mir-172;CAAP02002084.1/47016-46906 29760:Vitis vinifera
Length = 111
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 107 tgagaatcttgatgatgctgcat 129
|||||||||||||||||||||||
Sbjct: 79 tgagaatcttgatgatgctgcat 101
>RF00452;mir-172;AP003298.3/17210-16973 39947:Oryza sativa Japonica
Group
Length = 238
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 110 gaatcttgatgatgctgcatcgg 132
|||||||||||||||||||||||
Sbjct: 209 gaatcttgatgatgctgcatcgg 231
>RF00452;mir-172;AC189648.2/24074-23978 51351:Brassica rapa subsp.
pekinensis
Length = 97
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 110 gaatcttgatgatgctgcatcggcaa 135
||||||||||||||||||||| ||||
Sbjct: 68 gaatcttgatgatgctgcatcagcaa 93
>RF00452;mir-172;EU549227.1/243-121 3702:Arabidopsis thaliana
(thale cress)
Length = 123
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 tggagcatcatcaagattcaca 31
||||||||||||||||||||||
Sbjct: 12 tggagcatcatcaagattcaca 33
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 107 tgagaatcttgatgatgctgca 128
||||||||||||||||||||||
Sbjct: 91 tgagaatcttgatgatgctgca 112
