miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>51762_ptc-miR408:pmrd
          Length = 105

 Score = 60.0 bits (30), Expect = 3e-10
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                
Query: 59 tgttgtggctctactcatgcactgcctcttccctggct 96
          |||| ||||||||| |||||||||||||||||||||||
Sbjct: 60 tgttttggctctacccatgcactgcctcttccctggct 97




>54892_vvi-miR408:pmrd
          Length = 107

 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                   
Query: 56 agctgttgtggctctactcatgcactgcctcttccctggct 96
          ||||||| | ||||||| |||||||||||||||||||||||
Sbjct: 58 agctgtttttgctctacccatgcactgcctcttccctggct 98




>54389_rco-miR408:pmrd
          Length = 129

 Score = 56.0 bits (28), Expect = 5e-09
 Identities = 75/90 (83%), Gaps = 3/90 (3%)
 Strand = Plus / Plus

                                                                       
Query: 7   aagacagggaacaggtagagcatggatggagttcccaacagaaaaatagagctgttgtgg 66
           ||||| ||||||||| || |||||||||| | | | |||||||||    | ||||| |||
Sbjct: 25  aagactgggaacaggcagtgcatggatggggctactaacagaaaac---atctgttttgg 81

                                         
Query: 67  ctctactcatgcactgcctcttccctggct 96
           |||||| | |||||||||||||||||||||
Sbjct: 82  ctctacccctgcactgcctcttccctggct 111




>53677_ptc-miRf11855-akr:pmrd
          Length = 79

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                             
Query: 59 tgttgtggctctactcatgcactgcctcttccctg 93
          |||| ||||||||| ||||||||||||||||||||
Sbjct: 45 tgttttggctctacccatgcactgcctcttccctg 79




>48142_ath-miRf11042-akr:pmrd
          Length = 99

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                 
Query: 58 ctgttgtggctctactcatgcactgcctcttccctggct 96
          ||||| || |||||| |||||||||||||||||||||||
Sbjct: 43 ctgttttgtctctacccatgcactgcctcttccctggct 5



 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                          
Query: 8  agacagggaacaggtagagcatggatggagtt 39
          |||||||||||| | ||||||||||| |||||
Sbjct: 95 agacagggaacaagcagagcatggattgagtt 64




>47031_ath-miR408:pmrd
          Length = 218

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                  
Query: 58  ctgttgtggctctactcatgcactgcctcttccctggct 96
           ||||| || |||||| |||||||||||||||||||||||
Sbjct: 103 ctgttttgtctctacccatgcactgcctcttccctggct 141



 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                          
Query: 8  agacagggaacaggtagagcatggatggagtt 39
          |||||||||||| | ||||||||||| |||||
Sbjct: 51 agacagggaacaagcagagcatggattgagtt 82




>51397_ppt-miR408b:pmrd
          Length = 144

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 72  ctcatgcactgcctcttccctggct 96
           |||||||||||||||||||||||||
Sbjct: 90  ctcatgcactgcctcttccctggct 114




>54585_smo-miR408:pmrd
          Length = 109

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 75 atgcactgcctcttccctggctgc 98
          ||||||||||||||||||||||||
Sbjct: 76 atgcactgcctcttccctggctgc 99




>48428_cpt-miR408:pmrd
          Length = 100

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 74 catgcactgcctcttccctggct 96
          |||||||||||||||||||||||
Sbjct: 69 catgcactgcctcttccctggct 91



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 7  aagacagggaacaggtagagcatggatgga 36
          ||||| ||||||||| ||||||||||||||
Sbjct: 7  aagacggggaacaggcagagcatggatgga 36




>46892_aqc-miR408:pmrd
          Length = 87

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                 
Query: 74 catgcactgcctcttccctggct 96
          |||||||||||||||||||||||
Sbjct: 23 catgcactgcctcttccctggct 1




>51566_pta-miR408:pmrd
          Length = 86

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 75 atgcactgcctcttccctggct 96
          ||||||||||||||||||||||
Sbjct: 64 atgcactgcctcttccctggct 85




>48584_gma-miR408a:pmrd
          Length = 120

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                 
Query: 58  ctgttgtggctctactcatgcactgcctcttccctggc 95
           |||||||||||   |||||||||||||| |||||||||
Sbjct: 83  ctgttgtggctacgctcatgcactgcctgttccctggc 120




>55104_zma-miR408:pmrd
          Length = 191

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 76  tgcactgcctcttccctggct 96
           |||||||||||||||||||||
Sbjct: 153 tgcactgcctcttccctggct 173




>54690_tae-miR408:pmrd
          Length = 187

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 76  tgcactgcctcttccctggct 96
           |||||||||||||||||||||
Sbjct: 137 tgcactgcctcttccctggct 157




>54649_sof-miR408d:pmrd
          Length = 215

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 76  tgcactgcctcttccctggct 96
           |||||||||||||||||||||
Sbjct: 177 tgcactgcctcttccctggct 197




>54648_sof-miR408c:pmrd
          Length = 286

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 76  tgcactgcctcttccctggct 96
           |||||||||||||||||||||
Sbjct: 248 tgcactgcctcttccctggct 268




>54647_sof-miR408b:pmrd
          Length = 286

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 76  tgcactgcctcttccctggct 96
           |||||||||||||||||||||
Sbjct: 248 tgcactgcctcttccctggct 268




>54646_sof-miR408a:pmrd
          Length = 283

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 76  tgcactgcctcttccctggct 96
           |||||||||||||||||||||
Sbjct: 245 tgcactgcctcttccctggct 265




>54499_sbi-miR408:pmrd
          Length = 205

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 76  tgcactgcctcttccctggct 96
           |||||||||||||||||||||
Sbjct: 185 tgcactgcctcttccctggct 205




>48975_osa-miR408:pmrd
          Length = 213

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 76  tgcactgcctcttccctggct 96
           |||||||||||||||||||||
Sbjct: 154 tgcactgcctcttccctggct 174




>48317_bdi-miR408:pmrd
          Length = 133

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 74 catgcactgcctcttccctgg 94
          |||||||||||||||||||||
Sbjct: 68 catgcactgcctcttccctgg 88