miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;ABEU01015165.1/9230-9152 145481:Physcomitrella
patens subsp. patens
Length = 79
Score = 157 bits (79), Expect = 4e-38
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 25 gtcatgaggaatgacgagtggcccagattcgtttctggtctagaaattgaatttcggacc 84
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtcatgaggaatgacgagtggcccagattcgtttctggtctagaaattgaatttcggacc 60
Query: 85 aggcttcattccccttggc 103
|||||||||||||||||||
Sbjct: 61 aggcttcattccccttggc 79
>RF00075;mir-166;BABK01039514.1/607-703 34305:Lotus japonicus
Length = 97
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 75 atttcggaccaggcttcattcccct 99
|||||||||||||||||||||||||
Sbjct: 69 atttcggaccaggcttcattcccct 93
>RF00075;mir-166;CAAP02000553.1/130979-130890 29760:Vitis vinifera
Length = 90
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 75 atttcggaccaggcttcattcccct 99
|||||||||||||||||||||||||
Sbjct: 62 atttcggaccaggcttcattcccct 86
>RF00075;mir-166;ABEU01008046.1/36531-36607 145481:Physcomitrella
patens subsp. patens
Length = 77
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 77 ttcggaccaggcttcattccccttg 101
|||||||||||||||||||||||||
Sbjct: 51 ttcggaccaggcttcattccccttg 75
>RF00075;mir-166;ABIM01012128.1/12128-12036 3649:Carica papaya
(papaya)
Length = 93
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 75 atttcggaccaggcttcattcccc 98
||||||||||||||||||||||||
Sbjct: 65 atttcggaccaggcttcattcccc 88
>RF00075;mir-166;AARH01001058.1/130278-130374 3694:Populus
trichocarpa
Length = 97
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 75 atttcggaccaggcttcattcccc 98
||||||||||||||||||||||||
Sbjct: 69 atttcggaccaggcttcattcccc 92
>RF00075;mir-166;AASG02007713.1/11405-11313 3988:Ricinus communis
(castor bean)
Length = 93
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 75 atttcggaccaggcttcattcccc 98
||||||||||||||||||||||||
Sbjct: 65 atttcggaccaggcttcattcccc 88
>RF00075;mir-166;ABEU01003209.1/178750-178656
145481:Physcomitrella patens subsp. patens
Length = 95
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 76 tttcggaccaggcttcattcccct 99
||||||||||||||||||||||||
Sbjct: 68 tttcggaccaggcttcattcccct 91
>RF00075;mir-166;ABIM01027778.1/12902-13001 3649:Carica papaya
(papaya)
Length = 100
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 77 ttcggaccaggcttcattcccct 99
|||||||||||||||||||||||
Sbjct: 74 ttcggaccaggcttcattcccct 96
>RF00075;mir-166;AC216447.1/33512-33607 3694:Populus trichocarpa
Length = 96
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 77 ttcggaccaggcttcattcccct 99
|||||||||||||||||||||||
Sbjct: 70 ttcggaccaggcttcattcccct 92
>RF00075;mir-166;AASG02003407.1/927-777 3988:Ricinus communis
(castor bean)
Length = 151
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 78 tcggaccaggcttcattcccctt 100
|||||||||||||||||||||||
Sbjct: 126 tcggaccaggcttcattcccctt 148
>RF00075;mir-166;AC140029.19/70272-70377 3880:Medicago truncatula
(barrel medic)
Length = 106
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 77 ttcggaccaggcttcattcccct 99
|||||||||||||||||||||||
Sbjct: 80 ttcggaccaggcttcattcccct 102
>RF00075;mir-166;CU302248.6/62232-62044 3880:Medicago truncatula
(barrel medic)
Length = 189
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 77 ttcggaccaggcttcattcccct 99
|||||||||||||||||||||||
Sbjct: 163 ttcggaccaggcttcattcccct 185
>RF00075;mir-166;BABK01014008.1/1570-1448 34305:Lotus japonicus
Length = 123
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 77 ttcggaccaggcttcattcccct 99
|||||||||||||||||||||||
Sbjct: 97 ttcggaccaggcttcattcccct 119
>RF00075;mir-166;CAAP02001545.1/66166-66077 29760:Vitis vinifera
Length = 90
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 77 ttcggaccaggcttcattcccct 99
|||||||||||||||||||||||
Sbjct: 64 ttcggaccaggcttcattcccct 86
>RF00075;mir-166;ABXC01000715.1/152379-152276 4558:Sorghum bicolor
(sorghum)
Length = 104
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 tttcggaccaggcttcattcccc 98
|||||||||||||||||||||||
Sbjct: 77 tttcggaccaggcttcattcccc 99
>RF00075;mir-166;AK252042.1/8-95 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 88
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 tttcggaccaggcttcattcccc 98
|||||||||||||||||||||||
Sbjct: 61 tttcggaccaggcttcattcccc 83
>RF00075;mir-166;AAAA02007901.1/15784-15895 39946:Oryza sativa
Indica Group
Length = 112
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 tttcggaccaggcttcattcccc 98
|||||||||||||||||||||||
Sbjct: 85 tttcggaccaggcttcattcccc 107
>RF00075;mir-166;ABEU01002487.1/1609-1703 145481:Physcomitrella
patens subsp. patens
Length = 95
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 77 ttcggaccaggcttcattcccct 99
|||||||||||||||||||||||
Sbjct: 69 ttcggaccaggcttcattcccct 91
>RF00075;mir-166;ABEU01002053.1/8010-8104 145481:Physcomitrella
patens subsp. patens
Length = 95
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 77 ttcggaccaggcttcattcccct 99
|||||||||||||||||||||||
Sbjct: 69 ttcggaccaggcttcattcccct 91
>RF00075;mir-166;ABEU01001509.1/36651-36730 145481:Physcomitrella
patens subsp. patens
Length = 80
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 77 ttcggaccaggcttcattcccct 99
|||||||||||||||||||||||
Sbjct: 54 ttcggaccaggcttcattcccct 76
>RF00075;mir-166;ABEU01002839.1/114707-114612
145481:Physcomitrella patens subsp. patens
Length = 96
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 77 ttcggaccaggcttcattcccct 99
|||||||||||||||||||||||
Sbjct: 70 ttcggaccaggcttcattcccct 92
>RF00075;mir-166;ABEU01001509.1/36829-36913 145481:Physcomitrella
patens subsp. patens
Length = 85
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 77 ttcggaccaggcttcattcccct 99
|||||||||||||||||||||||
Sbjct: 59 ttcggaccaggcttcattcccct 81
>RF00075;mir-166;ABIM01012777.1/4514-4390 3649:Carica papaya
(papaya)
Length = 125
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 tcggaccaggcttcattcccct 99
||||||||||||||||||||||
Sbjct: 100 tcggaccaggcttcattcccct 121
>RF00075;mir-166;AC232546.1/61469-61348 51351:Brassica rapa subsp.
pekinensis
Length = 122
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 tcggaccaggcttcattcccct 99
||||||||||||||||||||||
Sbjct: 97 tcggaccaggcttcattcccct 118
>RF00075;mir-166;AC189591.2/50508-50400 51351:Brassica rapa subsp.
pekinensis
Length = 109
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 tcggaccaggcttcattcccct 99
||||||||||||||||||||||
Sbjct: 84 tcggaccaggcttcattcccct 105
>RF00075;mir-166;EU548911.1/166-263 3702:Arabidopsis thaliana
(thale cress)
Length = 98
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 tcggaccaggcttcattcccct 99
||||||||||||||||||||||
Sbjct: 73 tcggaccaggcttcattcccct 94
>RF00075;mir-166;EU548832.1/235-380 3702:Arabidopsis thaliana (thale
cress)
Length = 146
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 77 ttcggaccaggcttcattcccc 98
||||||||||||||||||||||
Sbjct: 120 ttcggaccaggcttcattcccc 141
>RF00075;mir-166;AB016871.1/77005-76861 3702:Arabidopsis thaliana
(thale cress)
Length = 145
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 tcggaccaggcttcattcccct 99
||||||||||||||||||||||
Sbjct: 120 tcggaccaggcttcattcccct 141
>RF00075;mir-166;EU548905.1/187-287 3702:Arabidopsis thaliana
(thale cress)
Length = 101
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 tcggaccaggcttcattcccct 99
||||||||||||||||||||||
Sbjct: 76 tcggaccaggcttcattcccct 97
>RF00075;mir-166;EU548914.1/298-397 3702:Arabidopsis thaliana
(thale cress)
Length = 100
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 tcggaccaggcttcattcccct 99
||||||||||||||||||||||
Sbjct: 75 tcggaccaggcttcattcccct 96
>RF00075;mir-166;AARH01006305.1/50528-50441 3694:Populus
trichocarpa
Length = 88
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 tcggaccaggcttcattcccct 99
||||||||||||||||||||||
Sbjct: 63 tcggaccaggcttcattcccct 84
>RF00075;mir-166;AARH01009662.1/134102-134198 3694:Populus
trichocarpa
Length = 97
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 tcggaccaggcttcattcccct 99
||||||||||||||||||||||
Sbjct: 72 tcggaccaggcttcattcccct 93
>RF00075;mir-166;AC209184.1/141607-141700 3694:Populus trichocarpa
Length = 94
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 tcggaccaggcttcattcccct 99
||||||||||||||||||||||
Sbjct: 69 tcggaccaggcttcattcccct 90
>RF00075;mir-166;AM464541.1/10325-10481 29760:Vitis vinifera
Length = 157
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 tcggaccaggcttcattcccct 99
||||||||||||||||||||||
Sbjct: 132 tcggaccaggcttcattcccct 153
>RF00075;mir-166;CAAP02000526.1/74430-74281 29760:Vitis vinifera
Length = 150
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 tcggaccaggcttcattcccct 99
||||||||||||||||||||||
Sbjct: 125 tcggaccaggcttcattcccct 146
>RF00075;mir-166;AC226041.1/11826-11708 4641:Musa acuminata
Length = 119
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 tcggaccaggcttcattcccct 99
||||||||||||||||||||||
Sbjct: 94 tcggaccaggcttcattcccct 115
>RF00075;mir-166;EU945393.1/89-202 4577:Zea mays
Length = 114
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 tcggaccaggcttcattcccct 99
||||||||||||||||||||||
Sbjct: 89 tcggaccaggcttcattcccct 110
>RF00075;mir-166;EU956093.1/113-209 4577:Zea mays
Length = 97
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 tcggaccaggcttcattcccct 99
||||||||||||||||||||||
Sbjct: 72 tcggaccaggcttcattcccct 93
>RF00075;mir-166;AY501432.1/1-122 4577:Zea mays
Length = 122
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 tcggaccaggcttcattcccct 99
||||||||||||||||||||||
Sbjct: 99 tcggaccaggcttcattcccct 120
>RF00075;mir-166;ABXC01000193.1/181030-180913 4558:Sorghum bicolor
(sorghum)
Length = 118
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 tcggaccaggcttcattcccct 99
||||||||||||||||||||||
Sbjct: 93 tcggaccaggcttcattcccct 114
>RF00075;mir-166;ABXC01000087.1/360026-360107 4558:Sorghum bicolor
(sorghum)
Length = 82
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 77 ttcggaccaggcttcattcccc 98
||||||||||||||||||||||
Sbjct: 56 ttcggaccaggcttcattcccc 77
>RF00075;mir-166;ABXC01000331.1/255164-255261 4558:Sorghum bicolor
(sorghum)
Length = 98
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 tcggaccaggcttcattcccct 99
||||||||||||||||||||||
Sbjct: 73 tcggaccaggcttcattcccct 94
>RF00075;mir-166;ABXC01000758.1/126828-126715 4558:Sorghum bicolor
(sorghum)
Length = 114
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 tcggaccaggcttcattcccct 99
||||||||||||||||||||||
Sbjct: 89 tcggaccaggcttcattcccct 110
>RF00075;mir-166;ABXC01002952.1/108749-108653 4558:Sorghum bicolor
(sorghum)
Length = 97
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 tcggaccaggcttcattcccct 99
||||||||||||||||||||||
Sbjct: 72 tcggaccaggcttcattcccct 93
>RF00075;mir-166;AC027660.2/136704-136618 39947:Oryza sativa
Japonica Group
Length = 87
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 tcggaccaggcttcattcccct 99
||||||||||||||||||||||
Sbjct: 62 tcggaccaggcttcattcccct 83
>RF00075;mir-166;AAAA02029560.1/62131-62045 39946:Oryza sativa
Indica Group
Length = 87
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 tcggaccaggcttcattcccct 99
||||||||||||||||||||||
Sbjct: 62 tcggaccaggcttcattcccct 83
>RF00075;mir-166;AAAA02030332.1/11899-12019 39946:Oryza sativa
Indica Group
Length = 121
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 tcggaccaggcttcattcccct 99
||||||||||||||||||||||
Sbjct: 96 tcggaccaggcttcattcccct 117
>RF00075;mir-166;AC096855.5/123486-123562 39947:Oryza sativa
Japonica Group
Length = 77
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 77 ttcggaccaggcttcattcccc 98
||||||||||||||||||||||
Sbjct: 51 ttcggaccaggcttcattcccc 72
>RF00075;mir-166;AP008208.1/26148565-26148667 39947:Oryza sativa
Japonica Group
Length = 103
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 tcggaccaggcttcattcccct 99
||||||||||||||||||||||
Sbjct: 78 tcggaccaggcttcattcccct 99
>RF00075;mir-166;ABEU01001509.1/37358-37431 145481:Physcomitrella
patens subsp. patens
Length = 74
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 tcggaccaggcttcattcccct 99
||||||||||||||||||||||
Sbjct: 49 tcggaccaggcttcattcccct 70
