miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>39478_ppt-MIR171a:mirbase
Length = 91
Score = 180 bits (91), Expect = 1e-46
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 1 aggcatgtgatattggtggcgctcaatcagatgaccatgcctgtgatgctggcgttgcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aggcatgtgatattggtggcgctcaatcagatgaccatgcctgtgatgctggcgttgcca 60
Query: 61 tcagattgagccgcgccaatatcacatcctt 91
|||||||||||||||||||||||||||||||
Sbjct: 61 tcagattgagccgcgccaatatcacatcctt 91
>39479_ppt-MIR171b:mirbase
Length = 92
Score = 61.9 bits (31), Expect = 7e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 61 tcagattgagccgcgccaatatcacatcctt 91
|||||||||||||||||||||||||||||||
Sbjct: 62 tcagattgagccgcgccaatatcacatcctt 92
>39739_smo-MIR171d:mirbase
Length = 103
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 65 attgagccgcgccaatatcacatcctt 91
|||||||||||||||||||||||||||
Sbjct: 71 attgagccgcgccaatatcacatcctt 97
>41627_vvi-MIR171f:mirbase
Length = 103
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 61 tcagattgagccgcgccaatatcac 85
|||||||||||||||||||||||||
Sbjct: 68 tcagattgagccgcgccaatatcac 92
>41541_sly-MIR171d:mirbase
Length = 112
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 61 tcagattgagccgcgccaatatcac 85
|||||||||||||||||||||||||
Sbjct: 70 tcagattgagccgcgccaatatcac 94
>41384_ptc-MIR171d:mirbase
Length = 100
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 61 tcagattgagccgcgccaatatcac 85
|||||||||||||||||||||||||
Sbjct: 69 tcagattgagccgcgccaatatcac 93
>41383_ptc-MIR171c:mirbase
Length = 104
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 61 tcagattgagccgcgccaatatcac 85
|||||||||||||||||||||||||
Sbjct: 73 tcagattgagccgcgccaatatcac 97
>41118_tcc-MIR171c:mirbase
Length = 123
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 61 tcagattgagccgcgccaatatcac 85
|||||||||||||||||||||||||
Sbjct: 81 tcagattgagccgcgccaatatcac 105
>41117_tcc-MIR171b:mirbase
Length = 120
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 61 tcagattgagccgcgccaatatcac 85
|||||||||||||||||||||||||
Sbjct: 78 tcagattgagccgcgccaatatcac 102
>40699_mtr-MIR171e:mirbase
Length = 93
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 61 tcagattgagccgcgccaatatcac 85
|||||||||||||||||||||||||
Sbjct: 66 tcagattgagccgcgccaatatcac 90
>40365_rco-MIR171g:mirbase
Length = 89
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 61 tcagattgagccgcgccaatatcac 85
|||||||||||||||||||||||||
Sbjct: 62 tcagattgagccgcgccaatatcac 86
>42555_sbi-MIR171j:mirbase
Length = 108
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 64 gattgagccgcgccaatatcac 85
||||||||||||||||||||||
Sbjct: 84 gattgagccgcgccaatatcac 105
>41626_vvi-MIR171e:mirbase
Length = 103
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 64 gattgagccgcgccaatatcac 85
||||||||||||||||||||||
Sbjct: 71 gattgagccgcgccaatatcac 92
>41540_sly-MIR171c:mirbase
Length = 121
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 64 gattgagccgcgccaatatcac 85
||||||||||||||||||||||
Sbjct: 79 gattgagccgcgccaatatcac 100
>41231_csi-MIR171a:mirbase
Length = 97
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 64 gattgagccgcgccaatatcac 85
||||||||||||||||||||||
Sbjct: 68 gattgagccgcgccaatatcac 89
>41211_ccl-MIR171:mirbase
Length = 321
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 64 gattgagccgcgccaatatcac 85
||||||||||||||||||||||
Sbjct: 123 gattgagccgcgccaatatcac 144
>42774_zma-MIR171n:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 64 gattgagccgcgccaatatc 83
||||||||||||||||||||
Sbjct: 58 gattgagccgcgccaatatc 77
>42769_zma-MIR171i:mirbase
Length = 104
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 64 gattgagccgcgccaatatcacatcctt 91
|||||||||| |||||||||||| ||||
Sbjct: 66 gattgagccgtgccaatatcacaacctt 93
>42766_zma-MIR171f:mirbase
Length = 155
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 64 gattgagccgcgccaatatcacatcctt 91
|||||||||| |||||||||||| ||||
Sbjct: 116 gattgagccgtgccaatatcacaacctt 143
>42761_zma-MIR171a:mirbase
Length = 99
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 64 gattgagccgcgccaatatc 83
||||||||||||||||||||
Sbjct: 80 gattgagccgcgccaatatc 99
>42552_sbi-MIR171g:mirbase
Length = 77
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 64 gattgagccgcgccaatatc 83
||||||||||||||||||||
Sbjct: 58 gattgagccgcgccaatatc 77
>42546_sbi-MIR171a:mirbase
Length = 161
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 64 gattgagccgcgccaatatcacatcctt 91
|||||||||| |||||||||||| ||||
Sbjct: 123 gattgagccgtgccaatatcacaacctt 150
>41981_osa-MIR171a:mirbase
Length = 96
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 64 gattgagccgcgccaatatc 83
||||||||||||||||||||
Sbjct: 68 gattgagccgcgccaatatc 87
>41764_bdi-MIR171a:mirbase
Length = 120
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 64 gattgagccgcgccaatatc 83
||||||||||||||||||||
Sbjct: 51 gattgagccgcgccaatatc 70
>41391_ptc-MIR171k:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 64 gattgagccgcgccaatatc 83
||||||||||||||||||||
Sbjct: 59 gattgagccgcgccaatatc 78
>41122_tcc-MIR171g:mirbase
Length = 115
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 64 gattgagccgcgccaatatcacat 87
|||||||||| |||||||||||||
Sbjct: 76 gattgagccgtgccaatatcacat 99
>41116_tcc-MIR171a:mirbase
Length = 119
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 64 gattgagccgcgccaatatc 83
||||||||||||||||||||
Sbjct: 80 gattgagccgcgccaatatc 99
>40457_gma-MIR171c:mirbase
Length = 104
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 64 gattgagccgcgccaatatcacat 87
|||||||||| |||||||||||||
Sbjct: 73 gattgagccgtgccaatatcacat 96
>40322_bra-MIR171e:mirbase
Length = 119
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 64 gattgagccgcgccaatatc 83
||||||||||||||||||||
Sbjct: 85 gattgagccgcgccaatatc 104
>40291_bna-MIR171g:mirbase
Length = 80
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 64 gattgagccgcgccaatatc 83
||||||||||||||||||||
Sbjct: 59 gattgagccgcgccaatatc 78
>40290_bna-MIR171f:mirbase
Length = 119
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 64 gattgagccgcgccaatatc 83
||||||||||||||||||||
Sbjct: 85 gattgagccgcgccaatatc 104
>40060_ath-MIR171a:mirbase
Length = 123
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 64 gattgagccgcgccaatatc 83
||||||||||||||||||||
Sbjct: 89 gattgagccgcgccaatatc 108
>39849_aly-MIR171a:mirbase
Length = 198
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 64 gattgagccgcgccaatatc 83
||||||||||||||||||||
Sbjct: 131 gattgagccgcgccaatatc 150
