miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;ABEU01005399.1/9805-9901 145481:Physcomitrella
patens subsp. patens
Length = 97
Score = 180 bits (91), Expect = 2e-45
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 1 aggcatgtgatattggtggcgctcaatcagatgaccatgcctgtgatgctggcgttgcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 aggcatgtgatattggtggcgctcaatcagatgaccatgcctgtgatgctggcgttgcca 62
Query: 61 tcagattgagccgcgccaatatcacatcctt 91
|||||||||||||||||||||||||||||||
Sbjct: 63 tcagattgagccgcgccaatatcacatcctt 93
>RF00643;MIR171_1;ABEU01001861.1/185639-185542
145481:Physcomitrella patens subsp. patens
Length = 98
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 61 tcagattgagccgcgccaatatcacatcctt 91
|||||||||||||||||||||||||||||||
Sbjct: 64 tcagattgagccgcgccaatatcacatcctt 94
>RF00643;MIR171_1;AY728474.1/2-89 3694:Populus trichocarpa
Length = 88
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 61 tcagattgagccgcgccaatatcac 85
|||||||||||||||||||||||||
Sbjct: 62 tcagattgagccgcgccaatatcac 86
>RF00643;MIR171_1;AASG02008156.1/3849-3747 3988:Ricinus communis
(castor bean)
Length = 103
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 61 tcagattgagccgcgccaatatcac 85
|||||||||||||||||||||||||
Sbjct: 69 tcagattgagccgcgccaatatcac 93
>RF00643;MIR171_1;AC152351.7/84740-84636 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 61 tcagattgagccgcgccaatatcac 85
|||||||||||||||||||||||||
Sbjct: 71 tcagattgagccgcgccaatatcac 95
>RF00643;MIR171_1;AC209588.1/19088-18986 4081:Solanum lycopersicum
Length = 103
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 61 tcagattgagccgcgccaatatcac 85
|||||||||||||||||||||||||
Sbjct: 69 tcagattgagccgcgccaatatcac 93
>RF00643;MIR171_1;AM437215.2/7577-7677 29760:Vitis vinifera
Length = 101
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 61 tcagattgagccgcgccaatatcac 85
|||||||||||||||||||||||||
Sbjct: 67 tcagattgagccgcgccaatatcac 91
>RF00643;MIR171_1;ABXC01002454.1/83659-83541 4558:Sorghum bicolor
(sorghum)
Length = 119
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 64 gattgagccgcgccaatatcacatcctt 91
|||||||||||||||||||||| |||||
Sbjct: 88 gattgagccgcgccaatatcacttcctt 115
>RF00643;MIR171_1;AP010316.1/5761-5862 34305:Lotus japonicus
Length = 102
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 64 gattgagccgcgccaatatcac 85
||||||||||||||||||||||
Sbjct: 71 gattgagccgcgccaatatcac 92
>RF00643;MIR171_1;AC212766.1/32177-32277 4081:Solanum lycopersicum
Length = 101
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 64 gattgagccgcgccaatatcac 85
||||||||||||||||||||||
Sbjct: 70 gattgagccgcgccaatatcac 91
>RF00643;MIR171_1;CAAP02000222.1/31256-31356 29760:Vitis vinifera
Length = 101
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 64 gattgagccgcgccaatatcac 85
||||||||||||||||||||||
Sbjct: 70 gattgagccgcgccaatatcac 91
