miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>39481_ppt-MIR319b:mirbase
Length = 160
Score = 317 bits (160), Expect = 1e-87
Identities = 160/160 (100%)
Strand = Plus / Plus
Query: 1 gagctcttttcagtccagtagcagctaatgtcgaaggttgtaccgctgccgactcaaact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gagctcttttcagtccagtagcagctaatgtcgaaggttgtaccgctgccgactcaaact 60
Query: 61 tccggcttccatatcacgacgcgtgatatggaatccgaaggtctgatccgggagctgatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tccggcttccatatcacgacgcgtgatatggaatccgaaggtctgatccgggagctgatc 120
Query: 121 gatctccaggttagcatctcttggactgaagggagctcct 160
||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gatctccaggttagcatctcttggactgaagggagctcct 160
>39483_ppt-MIR319d:mirbase
Length = 170
Score = 139 bits (70), Expect = 7e-34
Identities = 116/130 (89%), Gaps = 1/130 (0%)
Strand = Plus / Plus
Query: 30 gtcgaaggttgtaccgctgccgactcaaacttccggcttccatatcacgacgcgtgatat 89
|||||||||||| | |||||||||||||||||||||||||| |||| | || | || |||
Sbjct: 36 gtcgaaggttgtgctgctgccgactcaaacttccggcttccctatc-caacccctggtat 94
Query: 90 ggaatccgaaggtctgatccgggagctgatcgatctccaggttagcatctcttggactga 149
|||||||||| ||||||| ||||||||| || |||||| | |||||||||||||||||||
Sbjct: 95 ggaatccgaatgtctgatacgggagctgttcaatctccggcttagcatctcttggactga 154
Query: 150 agggagctcc 159
||||||||||
Sbjct: 155 agggagctcc 164
>39482_ppt-MIR319c:mirbase
Length = 189
Score = 67.9 bits (34), Expect = 2e-12
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 90 ggaatccgaaggtctgatccgggagctgatcgatctccaggttagcatctcttggactga 149
|||||||||| ||||||| |||||||||| || ||| || | ||| |||||||||||||
Sbjct: 104 ggaatccgaatgtctgatgcgggagctgagcggtcttcaactcagcttctcttggactga 163
Query: 150 agggagctcc 159
||||||||||
Sbjct: 164 agggagctcc 173
>39484_ppt-MIR319e:mirbase
Length = 174
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 35 aggttgtaccgctgccgactcaaacttccggcttcc 70
|||||| || |||||||| |||||||||||||||||
Sbjct: 43 aggttgcactgctgccgattcaaacttccggcttcc 78
Score = 46.1 bits (23), Expect = 8e-06
Identities = 60/71 (84%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 90 ggaatccgaaggtctgatccgggagctgatcgatctccaggtt-agcatctcttggactg 148
|||||||||| ||||||| ||||||||| || ||| || || ||| |||||||||||
Sbjct: 96 ggaatccgaatgtctgatgcgggagctgtgcggtcttcaactttagcgcctcttggactg 155
Query: 149 aagggagctcc 159
|||||||||||
Sbjct: 156 aagggagctcc 166
>39480_ppt-MIR319a:mirbase
Length = 169
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 137 tctcttggactgaagggagctcc 159
|||||||||||||||||||||||
Sbjct: 145 tctcttggactgaagggagctcc 167
>41635_vvi-MIR319b:mirbase
Length = 194
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 139 tcttggactgaagggagctcc 159
|||||||||||||||||||||
Sbjct: 161 tcttggactgaagggagctcc 181
>41410_ptc-MIR319g:mirbase
Length = 204
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 140 cttggactgaagggagctcct 160
|||||||||||||||||||||
Sbjct: 175 cttggactgaagggagctcct 195
>41409_ptc-MIR319f:mirbase
Length = 202
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 140 cttggactgaagggagctcct 160
|||||||||||||||||||||
Sbjct: 173 cttggactgaagggagctcct 193
>41026_pvu-MIR319c:mirbase
Length = 734
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 140 cttggactgaagggagctcct 160
|||||||||||||||||||||
Sbjct: 409 cttggactgaagggagctcct 429
>40368_rco-MIR319b:mirbase
Length = 179
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 139 tcttggactgaagggagctcc 159
|||||||||||||||||||||
Sbjct: 152 tcttggactgaagggagctcc 172
>42642_tae-MIR319:mirbase
Length = 211
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 140 cttggactgaagggagctcc 159
||||||||||||||||||||
Sbjct: 183 cttggactgaagggagctcc 202
>41770_bdi-MIR319:mirbase
Length = 280
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 140 cttggactgaagggagctcc 159
||||||||||||||||||||
Sbjct: 225 cttggactgaagggagctcc 244
>41638_vvi-MIR319f:mirbase
Length = 193
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 140 cttggactgaagggagctcc 159
||||||||||||||||||||
Sbjct: 161 cttggactgaagggagctcc 180
>41637_vvi-MIR319e:mirbase
Length = 107
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 141 ttggactgaagggagctcct 160
||||||||||||||||||||
Sbjct: 77 ttggactgaagggagctcct 96
>41636_vvi-MIR319c:mirbase
Length = 182
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 140 cttggactgaagggagctcc 159
||||||||||||||||||||
Sbjct: 150 cttggactgaagggagctcc 169
>41544_sly-MIR319:mirbase
Length = 168
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 140 cttggactgaagggagctcc 159
||||||||||||||||||||
Sbjct: 149 cttggactgaagggagctcc 168
>41411_ptc-MIR319h:mirbase
Length = 195
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 141 ttggactgaagggagctcct 160
||||||||||||||||||||
Sbjct: 165 ttggactgaagggagctcct 184
>41408_ptc-MIR319e:mirbase
Length = 192
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 141 ttggactgaagggagctcct 160
||||||||||||||||||||
Sbjct: 164 ttggactgaagggagctcct 183
>41407_ptc-MIR319d:mirbase
Length = 193
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 140 cttggactgaagggagctcc 159
||||||||||||||||||||
Sbjct: 164 cttggactgaagggagctcc 183
>41406_ptc-MIR319c:mirbase
Length = 196
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 140 cttggactgaagggagctcc 159
||||||||||||||||||||
Sbjct: 167 cttggactgaagggagctcc 186
>41404_ptc-MIR319a:mirbase
Length = 188
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 140 cttggactgaagggagctcc 159
||||||||||||||||||||
Sbjct: 159 cttggactgaagggagctcc 178
>41282_ctr-MIR319:mirbase
Length = 186
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 140 cttggactgaagggagctcc 159
||||||||||||||||||||
Sbjct: 156 cttggactgaagggagctcc 175
>41236_csi-MIR319:mirbase
Length = 123
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 141 ttggactgaagggagctcct 160
||||||||||||||||||||
Sbjct: 91 ttggactgaagggagctcct 110
>41185_aqc-MIR319:mirbase
Length = 177
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 140 cttggactgaagggagctcc 159
||||||||||||||||||||
Sbjct: 154 cttggactgaagggagctcc 173
>41129_tcc-MIR319:mirbase
Length = 133
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 141 ttggactgaagggagctcct 160
||||||||||||||||||||
Sbjct: 94 ttggactgaagggagctcct 113
>40704_mtr-MIR319b:mirbase
Length = 180
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 140 cttggactgaagggagctcc 159
||||||||||||||||||||
Sbjct: 155 cttggactgaagggagctcc 174
>40703_mtr-MIR319:mirbase
Length = 207
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 140 cttggactgaagggagctcc 159
||||||||||||||||||||
Sbjct: 168 cttggactgaagggagctcc 187
>40465_gma-MIR319b:mirbase
Length = 208
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 140 cttggactgaagggagctcc 159
||||||||||||||||||||
Sbjct: 169 cttggactgaagggagctcc 188
>40464_gma-MIR319a:mirbase
Length = 207
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 140 cttggactgaagggagctcc 159
||||||||||||||||||||
Sbjct: 168 cttggactgaagggagctcc 187
>40370_rco-MIR319d:mirbase
Length = 187
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 141 ttggactgaagggagctcct 160
||||||||||||||||||||
Sbjct: 162 ttggactgaagggagctcct 181
>40369_rco-MIR319c:mirbase
Length = 188
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 140 cttggactgaagggagctcc 159
||||||||||||||||||||
Sbjct: 162 cttggactgaagggagctcc 181
>40367_rco-MIR319a:mirbase
Length = 211
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 140 cttggactgaagggagctcc 159
||||||||||||||||||||
Sbjct: 185 cttggactgaagggagctcc 204
>40071_ath-MIR319c:mirbase
Length = 199
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 141 ttggactgaagggagctcct 160
||||||||||||||||||||
Sbjct: 170 ttggactgaagggagctcct 189
>40070_ath-MIR319b:mirbase
Length = 172
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 140 cttggactgaagggagctcc 159
||||||||||||||||||||
Sbjct: 151 cttggactgaagggagctcc 170
>39861_aly-MIR319d:mirbase
Length = 267
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 141 ttggactgaagggagctcct 160
||||||||||||||||||||
Sbjct: 204 ttggactgaagggagctcct 223
>39860_aly-MIR319c:mirbase
Length = 271
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 141 ttggactgaagggagctcct 160
||||||||||||||||||||
Sbjct: 204 ttggactgaagggagctcct 223
>39859_aly-MIR319b:mirbase
Length = 246
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 140 cttggactgaagggagctcc 159
||||||||||||||||||||
Sbjct: 190 cttggactgaagggagctcc 209
>39740_smo-MIR319:mirbase
Length = 215
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 140 cttggactgaagggagctcc 159
||||||||||||||||||||
Sbjct: 185 cttggactgaagggagctcc 204
