miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>39482_ppt-MIR319c:mirbase
Length = 189
Score = 375 bits (189), Expect = e-105
Identities = 189/189 (100%)
Strand = Plus / Plus
Query: 1 taacctcactggctgtgggagcttccttcggttcaatagtggctgatatgaggttgcact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 taacctcactggctgtgggagcttccttcggttcaatagtggctgatatgaggttgcact 60
Query: 61 gctgccgactcaaacttccggcttccctctcttagaatggcagggaatccgaatgtctga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gctgccgactcaaacttccggcttccctctcttagaatggcagggaatccgaatgtctga 120
Query: 121 tgcgggagctgagcggtcttcaactcagcttctcttggactgaagggagctcccatgtct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgcgggagctgagcggtcttcaactcagcttctcttggactgaagggagctcccatgtct 180
Query: 181 ttgtggtta 189
|||||||||
Sbjct: 181 ttgtggtta 189
>39484_ppt-MIR319e:mirbase
Length = 174
Score = 198 bits (100), Expect = 1e-51
Identities = 152/168 (90%), Gaps = 1/168 (0%)
Strand = Plus / Plus
Query: 15 gtgggagcttccttcggttcaatagtggctgatatgaggttgcactgctgccgactcaaa 74
||||||||| | | ||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 7 gtgggagctccttccggttcaatagtggctgatgtgaggttgcactgctgccgattcaaa 66
Query: 75 cttccggcttccctctcttagaatggcagggaatccgaatgtctgatgcgggagctgagc 134
|||||||||||||| ||||| | | ||||||||||||||||||||||||||||||| ||
Sbjct: 67 cttccggcttccctttcttaacacgacagggaatccgaatgtctgatgcgggagctgtgc 126
Query: 135 ggtcttcaac-tcagcttctcttggactgaagggagctcccatgtctt 181
|||||||||| | ||| |||||||||||||||||||||||| |||||
Sbjct: 127 ggtcttcaactttagcgcctcttggactgaagggagctcccaagtctt 174
>39483_ppt-MIR319d:mirbase
Length = 170
Score = 85.7 bits (43), Expect = 1e-17
Identities = 132/159 (83%), Gaps = 2/159 (1%)
Strand = Plus / Plus
Query: 18 ggagcttccttcggttcaatagtggctgatatga-ggttgcactgctgccgactcaaact 76
||||||| ||||||| ||||||||||||| || ||||| ||||||||||||||||||
Sbjct: 7 ggagctttcttcggtccaatagtggctgagtcgaaggttgtgctgctgccgactcaaact 66
Query: 77 tccggcttccctctctta-gaatggcagggaatccgaatgtctgatgcgggagctgagcg 135
|||||||||||| || | ||| | |||||||||||||||||| ||||||||| |
Sbjct: 67 tccggcttccctatccaacccctggtatggaatccgaatgtctgatacgggagctgttca 126
Query: 136 gtcttcaactcagcttctcttggactgaagggagctccc 174
||| | || ||| ||||||||||||||||||||||||
Sbjct: 127 atctccggcttagcatctcttggactgaagggagctccc 165
>39481_ppt-MIR319b:mirbase
Length = 160
Score = 67.9 bits (34), Expect = 3e-12
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 104 ggaatccgaatgtctgatgcgggagctgagcggtcttcaactcagcttctcttggactga 163
|||||||||| ||||||| |||||||||| || ||| || | ||| |||||||||||||
Sbjct: 90 ggaatccgaaggtctgatccgggagctgatcgatctccaggttagcatctcttggactga 149
Query: 164 agggagctcc 173
||||||||||
Sbjct: 150 agggagctcc 159
>41282_ctr-MIR319:mirbase
Length = 186
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 154 cttggactgaagggagctcccat 176
|||||||||||||||||||||||
Sbjct: 156 cttggactgaagggagctcccat 178
>39480_ppt-MIR319a:mirbase
Length = 169
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 151 tctcttggactgaagggagctcc 173
|||||||||||||||||||||||
Sbjct: 145 tctcttggactgaagggagctcc 167
>41635_vvi-MIR319b:mirbase
Length = 194
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 153 tcttggactgaagggagctccc 174
||||||||||||||||||||||
Sbjct: 161 tcttggactgaagggagctccc 182
>40368_rco-MIR319b:mirbase
Length = 179
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 153 tcttggactgaagggagctccc 174
||||||||||||||||||||||
Sbjct: 152 tcttggactgaagggagctccc 173
>42642_tae-MIR319:mirbase
Length = 211
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 154 cttggactgaagggagctccc 174
|||||||||||||||||||||
Sbjct: 183 cttggactgaagggagctccc 203
>41770_bdi-MIR319:mirbase
Length = 280
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 154 cttggactgaagggagctccc 174
|||||||||||||||||||||
Sbjct: 225 cttggactgaagggagctccc 245
>41639_vvi-MIR319g:mirbase
Length = 222
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 155 ttggactgaagggagctccca 175
|||||||||||||||||||||
Sbjct: 192 ttggactgaagggagctccca 212
>41638_vvi-MIR319f:mirbase
Length = 193
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 154 cttggactgaagggagctccc 174
|||||||||||||||||||||
Sbjct: 161 cttggactgaagggagctccc 181
>41636_vvi-MIR319c:mirbase
Length = 182
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 154 cttggactgaagggagctccc 174
|||||||||||||||||||||
Sbjct: 150 cttggactgaagggagctccc 170
>41407_ptc-MIR319d:mirbase
Length = 193
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 154 cttggactgaagggagctccc 174
|||||||||||||||||||||
Sbjct: 164 cttggactgaagggagctccc 184
>41406_ptc-MIR319c:mirbase
Length = 196
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 154 cttggactgaagggagctccc 174
|||||||||||||||||||||
Sbjct: 167 cttggactgaagggagctccc 187
>41404_ptc-MIR319a:mirbase
Length = 188
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 154 cttggactgaagggagctccc 174
|||||||||||||||||||||
Sbjct: 159 cttggactgaagggagctccc 179
>41185_aqc-MIR319:mirbase
Length = 177
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 154 cttggactgaagggagctccc 174
|||||||||||||||||||||
Sbjct: 154 cttggactgaagggagctccc 174
>40704_mtr-MIR319b:mirbase
Length = 180
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 154 cttggactgaagggagctccc 174
|||||||||||||||||||||
Sbjct: 155 cttggactgaagggagctccc 175
>40703_mtr-MIR319:mirbase
Length = 207
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 154 cttggactgaagggagctccc 174
|||||||||||||||||||||
Sbjct: 168 cttggactgaagggagctccc 188
>40465_gma-MIR319b:mirbase
Length = 208
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 154 cttggactgaagggagctccc 174
|||||||||||||||||||||
Sbjct: 169 cttggactgaagggagctccc 189
>40464_gma-MIR319a:mirbase
Length = 207
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 154 cttggactgaagggagctccc 174
|||||||||||||||||||||
Sbjct: 168 cttggactgaagggagctccc 188
>40369_rco-MIR319c:mirbase
Length = 188
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 154 cttggactgaagggagctccc 174
|||||||||||||||||||||
Sbjct: 162 cttggactgaagggagctccc 182
>40367_rco-MIR319a:mirbase
Length = 211
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 154 cttggactgaagggagctccc 174
|||||||||||||||||||||
Sbjct: 185 cttggactgaagggagctccc 205
>40070_ath-MIR319b:mirbase
Length = 172
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 154 cttggactgaagggagctccc 174
|||||||||||||||||||||
Sbjct: 151 cttggactgaagggagctccc 171
>39859_aly-MIR319b:mirbase
Length = 246
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 154 cttggactgaagggagctccc 174
|||||||||||||||||||||
Sbjct: 190 cttggactgaagggagctccc 210
>39740_smo-MIR319:mirbase
Length = 215
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 154 cttggactgaagggagctccc 174
|||||||||||||||||||||
Sbjct: 185 cttggactgaagggagctccc 205
>41544_sly-MIR319:mirbase
Length = 168
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 154 cttggactgaagggagctcc 173
||||||||||||||||||||
Sbjct: 149 cttggactgaagggagctcc 168
>41410_ptc-MIR319g:mirbase
Length = 204
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 154 cttggactgaagggagctcc 173
||||||||||||||||||||
Sbjct: 175 cttggactgaagggagctcc 194
>41409_ptc-MIR319f:mirbase
Length = 202
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 154 cttggactgaagggagctcc 173
||||||||||||||||||||
Sbjct: 173 cttggactgaagggagctcc 192
>41405_ptc-MIR319b:mirbase
Length = 185
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 155 ttggactgaagggagctccc 174
||||||||||||||||||||
Sbjct: 157 ttggactgaagggagctccc 176
>41026_pvu-MIR319c:mirbase
Length = 734
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 154 cttggactgaagggagctcc 173
||||||||||||||||||||
Sbjct: 409 cttggactgaagggagctcc 428
>40069_ath-MIR319a:mirbase
Length = 176
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 155 ttggactgaagggagctccc 174
||||||||||||||||||||
Sbjct: 154 ttggactgaagggagctccc 173
>39858_aly-MIR319a:mirbase
Length = 221
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 155 ttggactgaagggagctccc 174
||||||||||||||||||||
Sbjct: 177 ttggactgaagggagctccc 196
