miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;ABEU01002787.1/15883-15704 145481:Physcomitrella
patens subsp. patens
Length = 180
Score = 357 bits (180), Expect = 4e-98
Identities = 180/180 (100%)
Strand = Plus / Plus
Query: 7 cactggctgtgggagcttccttcggttcaatagtggctgatatgaggttgcactgctgcc 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cactggctgtgggagcttccttcggttcaatagtggctgatatgaggttgcactgctgcc 60
Query: 67 gactcaaacttccggcttccctctcttagaatggcagggaatccgaatgtctgatgcggg 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gactcaaacttccggcttccctctcttagaatggcagggaatccgaatgtctgatgcggg 120
Query: 127 agctgagcggtcttcaactcagcttctcttggactgaagggagctcccatgtctttgtgg 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agctgagcggtcttcaactcagcttctcttggactgaagggagctcccatgtctttgtgg 180
>RF00638;MIR159;ABEU01006795.1/68509-68689 145481:Physcomitrella
patens subsp. patens
Length = 181
Score = 200 bits (101), Expect = 5e-51
Identities = 156/173 (90%), Gaps = 1/173 (0%)
Strand = Plus / Plus
Query: 15 gtgggagcttccttcggttcaatagtggctgatatgaggttgcactgctgccgactcaaa 74
||||||||| | | ||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 9 gtgggagctccttccggttcaatagtggctgatgtgaggttgcactgctgccgattcaaa 68
Query: 75 cttccggcttccctctcttagaatggcagggaatccgaatgtctgatgcgggagctgagc 134
|||||||||||||| ||||| | | ||||||||||||||||||||||||||||||| ||
Sbjct: 69 cttccggcttccctttcttaacacgacagggaatccgaatgtctgatgcgggagctgtgc 128
Query: 135 ggtcttcaac-tcagcttctcttggactgaagggagctcccatgtctttgtgg 186
|||||||||| | ||| |||||||||||||||||||||||| ||||| ||||
Sbjct: 129 ggtcttcaactttagcgcctcttggactgaagggagctcccaagtcttcgtgg 181
>RF00638;MIR159;ABEU01012145.1/27473-27654 145481:Physcomitrella
patens subsp. patens
Length = 182
Score = 85.7 bits (43), Expect = 2e-16
Identities = 132/159 (83%), Gaps = 2/159 (1%)
Strand = Plus / Plus
Query: 18 ggagcttccttcggttcaatagtggctgatatga-ggttgcactgctgccgactcaaact 76
||||||| ||||||| ||||||||||||| || ||||| ||||||||||||||||||
Sbjct: 12 ggagctttcttcggtccaatagtggctgagtcgaaggttgtgctgctgccgactcaaact 71
Query: 77 tccggcttccctctctta-gaatggcagggaatccgaatgtctgatgcgggagctgagcg 135
|||||||||||| || | ||| | |||||||||||||||||| ||||||||| |
Sbjct: 72 tccggcttccctatccaacccctggtatggaatccgaatgtctgatacgggagctgttca 131
Query: 136 gtcttcaactcagcttctcttggactgaagggagctccc 174
||| | || ||| ||||||||||||||||||||||||
Sbjct: 132 atctccggcttagcatctcttggactgaagggagctccc 170
>RF00638;MIR159;ABEU01011353.1/55901-55718 145481:Physcomitrella
patens subsp. patens
Length = 184
Score = 67.9 bits (34), Expect = 5e-11
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 104 ggaatccgaatgtctgatgcgggagctgagcggtcttcaactcagcttctcttggactga 163
|||||||||| ||||||| |||||||||| || ||| || | ||| |||||||||||||
Sbjct: 102 ggaatccgaaggtctgatccgggagctgatcgatctccaggttagcatctcttggactga 161
Query: 164 agggagctcc 173
||||||||||
Sbjct: 162 agggagctcc 171
>RF00638;MIR159;ABIM01013664.1/2939-3169 3649:Carica papaya (papaya)
Length = 231
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 153 tcttggactgaagggagctccc 174
||||||||||||||||||||||
Sbjct: 198 tcttggactgaagggagctccc 219
>RF00638;MIR159;AASG02014601.1/2536-2726 3988:Ricinus communis
(castor bean)
Length = 191
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 153 tcttggactgaagggagctccc 174
||||||||||||||||||||||
Sbjct: 158 tcttggactgaagggagctccc 179
>RF00638;MIR159;CAAP02000776.1/6894-7088 29760:Vitis vinifera
Length = 195
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 153 tcttggactgaagggagctccc 174
||||||||||||||||||||||
Sbjct: 162 tcttggactgaagggagctccc 183
