miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>39490_ppt-MIR408b:mirbase
Length = 144
Score = 285 bits (144), Expect = 4e-78
Identities = 144/144 (100%)
Strand = Plus / Plus
Query: 1 gtggaagagagagagtggtggaagggagggaagccagcgtgaggcaatgcatgacaacag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtggaagagagagagtggtggaagggagggaagccagcgtgaggcaatgcatgacaacag 60
Query: 61 catgcccaggaggtcctgagggtgttgtcctcatgcactgcctcttccctggcttcccta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 catgcccaggaggtcctgagggtgttgtcctcatgcactgcctcttccctggcttcccta 120
Query: 121 catagctcgccattcttgtgctct 144
||||||||||||||||||||||||
Sbjct: 121 catagctcgccattcttgtgctct 144
>40405_ahy-MIR408:mirbase
Length = 122
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 90 ctcatgcactgcctcttccctggct 114
|||||||||||||||||||||||||
Sbjct: 78 ctcatgcactgcctcttccctggct 102
>40404_ahy-MIR408:mirbase
Length = 122
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 90 ctcatgcactgcctcttccctggct 114
|||||||||||||||||||||||||
Sbjct: 78 ctcatgcactgcctcttccctggct 102
>41463_ptc-MIR408:mirbase
Length = 105
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 92 catgcactgcctcttccctggctt 115
||||||||||||||||||||||||
Sbjct: 75 catgcactgcctcttccctggctt 98
>40391_rco-MIR408:mirbase
Length = 92
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 94 tgcactgcctcttccctggcttcc 117
||||||||||||||||||||||||
Sbjct: 68 tgcactgcctcttccctggcttcc 91
>41683_vvi-MIR408:mirbase
Length = 107
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 92 catgcactgcctcttccctggct 114
|||||||||||||||||||||||
Sbjct: 76 catgcactgcctcttccctggct 98
>41252_csi-MIR408:mirbase
Length = 153
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 92 catgcactgcctcttccctggct 114
|||||||||||||||||||||||
Sbjct: 119 catgcactgcctcttccctggct 141
>41193_aqc-MIR408:mirbase
Length = 87
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 92 catgcactgcctcttccctggct 114
|||||||||||||||||||||||
Sbjct: 23 catgcactgcctcttccctggct 1
>40108_ath-MIR408:mirbase
Length = 218
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 92 catgcactgcctcttccctggct 114
|||||||||||||||||||||||
Sbjct: 119 catgcactgcctcttccctggct 141
>39897_aly-MIR408:mirbase
Length = 211
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 92 catgcactgcctcttccctggct 114
|||||||||||||||||||||||
Sbjct: 116 catgcactgcctcttccctggct 138
>42647_tae-MIR408:mirbase
Length = 187
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 94 tgcactgcctcttccctggcttccct 119
||||||||||||||||||||| ||||
Sbjct: 137 tgcactgcctcttccctggctcccct 162
>42052_osa-MIR408:mirbase
Length = 213
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 94 tgcactgcctcttccctggcttccct 119
||||||||||||||||||||| ||||
Sbjct: 154 tgcactgcctcttccctggctcccct 179
>39742_smo-MIR408:mirbase
Length = 109
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 93 atgcactgcctcttccctggct 114
||||||||||||||||||||||
Sbjct: 76 atgcactgcctcttccctggct 97
>39428_pta-MIR408:mirbase
Length = 86
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 93 atgcactgcctcttccctggct 114
||||||||||||||||||||||
Sbjct: 64 atgcactgcctcttccctggct 85
>42830_zma-MIR408b:mirbase
Length = 147
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 94 tgcactgcctcttccctggct 114
|||||||||||||||||||||
Sbjct: 126 tgcactgcctcttccctggct 146
>42829_zma-MIR408:mirbase
Length = 191
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 94 tgcactgcctcttccctggct 114
|||||||||||||||||||||
Sbjct: 153 tgcactgcctcttccctggct 173
>42600_sbi-MIR408:mirbase
Length = 205
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 94 tgcactgcctcttccctggct 114
|||||||||||||||||||||
Sbjct: 185 tgcactgcctcttccctggct 205
>42474_ssp-MIR408d:mirbase
Length = 180
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 94 tgcactgcctcttccctggct 114
|||||||||||||||||||||
Sbjct: 159 tgcactgcctcttccctggct 179
>42473_ssp-MIR408a:mirbase
Length = 248
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 94 tgcactgcctcttccctggct 114
|||||||||||||||||||||
Sbjct: 227 tgcactgcctcttccctggct 247
>42465_sof-MIR408d:mirbase
Length = 215
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 94 tgcactgcctcttccctggct 114
|||||||||||||||||||||
Sbjct: 177 tgcactgcctcttccctggct 197
>42464_sof-MIR408c:mirbase
Length = 286
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 94 tgcactgcctcttccctggct 114
|||||||||||||||||||||
Sbjct: 248 tgcactgcctcttccctggct 268
>42463_sof-MIR408b:mirbase
Length = 286
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 94 tgcactgcctcttccctggct 114
|||||||||||||||||||||
Sbjct: 248 tgcactgcctcttccctggct 268
>42462_sof-MIR408a:mirbase
Length = 283
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 94 tgcactgcctcttccctggct 114
|||||||||||||||||||||
Sbjct: 245 tgcactgcctcttccctggct 265
