miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00714;MIR535;ABEU01003761.1/27167-27269 145481:Physcomitrella
patens subsp. patens
Length = 103
Score = 168 bits (85), Expect = 7e-42
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 1 ggtgacaacgagagagagcacgccggaatgcgttcatgcagcgagtgcctggaggtgttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 ggtgacaacgagagagagcacgccggaatgcgttcatgcagcgagtgcctggaggtgttc 68
Query: 61 gagcgtgccctctcccgtcgtcacc 85
|||||||||||||||||||||||||
Sbjct: 69 gagcgtgccctctcccgtcgtcacc 93
>RF00714;MIR535;ABEU01009956.1/139970-139869 145481:Physcomitrella
patens subsp. patens
Length = 102
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 ggtgacaacgagagagagcacgccggaatgc 31
||||||||||||||||||||||| |||||||
Sbjct: 9 ggtgacaacgagagagagcacgctggaatgc 39
>RF00714;MIR535;ABEU01004601.1/20377-20277 145481:Physcomitrella
patens subsp. patens
Length = 101
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 ggtgacaacgagagagagcacgccggaatgc 31
||||||||||||||||||||||| |||||||
Sbjct: 9 ggtgacaacgagagagagcacgctggaatgc 39
>RF00714;MIR535;ABEU01006897.1/4394-4494 145481:Physcomitrella
patens subsp. patens
Length = 101
Score = 54.0 bits (27), Expect = 3e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 2 gtgacaacgagagagagcacgccggaatgcgttca 36
|||||||||||||||||||||| ||||||| ||||
Sbjct: 10 gtgacaacgagagagagcacgctggaatgctttca 44
>RF00714;MIR535;AAAA02031914.1/1343-1245 39946:Oryza sativa Indica
Group
Length = 99
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 ggtgacaacgagagagagcacgccgg 26
||||||||||||||||||||||||||
Sbjct: 2 ggtgacaacgagagagagcacgccgg 27
>RF00714;MIR535;ABIM01002931.1/4831-4931 3649:Carica papaya
(papaya)
Length = 101
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 ggtgacaacgagagagagcacgc 23
|||||||||||||||||||||||
Sbjct: 9 ggtgacaacgagagagagcacgc 31
